Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0713 ATGGTTTCACCGGAAAACAGCAATTGGCTGTTCGATTACCCGTTGATCGACGACGTTATTCCCGTCGGCGACGCCTCCTTCGCCGCCGTCTCCGCCTCTGCCTTCTCCTGGCCCCCACCCCCCTCCAATGTCAGTGTTGAAATTGATGCTGCTTCACTTGGAGATTCTGATGGCCTCAAAGATCCTGCTTTGAAGAAAAGATGCTTATTCTTGGATGCAGTTATCCCATATCTCTTGTTTCCTGATGCAGGGGTAGATCTGATTCATGTACTGCTTCTAGCTCTAAGGCATGTCGGGAGAAGTTGCGGAGGGATAGGCTTAATGACAAGTAAACTTTTGAATCCTCGCCATCTTCCCTCTATTTATAACTGTTCTCCTTCTGGGTTTGTGAGTAAATTTGTTTTGGAGGCATATATTAATATGATTGACCTGAATAGGTTTGTTGAATTGGGCTCCATCTTGGAGCCTGGAAGGCCTCCCAAAACAGACAAGGCTGCTGTTCTGATTGATGCTGCCCGAATGGTGACACAGCTGCGGGATGAAGCACAGAAGTTGAAAGACTCAAATACGAGTCTTCAAGAGAAGATTAAAGAGTTAAAGGCCGAGAAGAATGAACTTCGTGATGAGAAACAGAGGCTTAAGGCAGAGAAAGAGAAGTTGGAGCTGCAAGTAAAATCAATGAATGCCCAACCTACTTTCTTGCCACCACCTCCTGCAATCCCTGCTGCATTTGCTCCACAAGGCCAAGCCCCCGGAAACAAGTTGGTGCCTTTCATCAGTTATCCGGGAGTTGCCATGTGGCAATTTATGCCTCCGGCTGCTGTGGATACCTCACAGGATCATGTACTCCGTCCACCAGTTGCCTAA 867 0.4764 MVSPENSNWLFDYPLIDDVIPVGDASFAAVSASAFSWPPPPSNVSVEIDAASLGDSDGLKDPALKKRCLFLDAVIPYLLFPDAGVDLIHVLLLALRHVGRSCGGIGLMTSKLLNPRHLPSIYNCSPSGFVSKFVLEAYINMIDLNRFVELGSILEPGRPPKTDKAAVLIDAARMVTQLRDEAQKLKDSNTSLQEKIKELKAEKNELRDEKQRLKAEKEKLELQVKSMNAQPTFLPPPPAIPAAFAPQGQAPGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0713 288 Gene3D - 168 230 - -
Aed1g0713 288 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 203 IPR036638 GO:0046983
Aed1g0713 288 CDD bZIP 193 225 - -
Aed1g0713 288 Coils Coil 168 230 - -
Aed1g0713 288 CDD bHLH_AtILR3_like 144 207 - -
Aed1g0713 288 PANTHER BHLH TRANSCRIPTION FACTOR 145 288 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Aed1g0713 288 PANTHER BHLH TRANSCRIPTION FACTOR 1 68 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Aed1g0713 288 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 68 - -
Aed1g0713 288 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 145 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0713 Aed-Chr1 8281243 8283557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0713 1 288 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 51.864 1.47e-85 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0713 - - vvi:100251621 249.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0713 1 8281243 8283557 Aed1g0713 1 8281243 8283557 ECH
Aed1g0713 1 8281243 8283557 Aed5g1029 5 8124809 8128813 PCT