LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed1g0708	ATGGCAGTTCAACAATATATGGGTATCACAAAGGCTGTCTTTTGCATCATTTTGGCTTTTAATGTTGTGCCAATAGTCAGCATTGAAGAGAAGAAAGCTCAAGAAGAATTCATTAGCCAACTTTTTGATCCAACATCTGGACTATTAACACAGGACACGGCAGAGGTACTATGGATCACTTGCTGGGAAGATTTTATTCATTTAAAGAAAGAAGTTGGAGATCTTGACTTATGCCTCCCAAAGGAATCATGCAGAAACACCAATGCAGTTAGTTCAGAAATTGGCTCAGTAGCCAGAGAAAACATCCAAAAATTGATTAGTACCTGCTATCCTCAGTTAAAGGAAAATATTCTTCACTGTTTGAGAAAAAACAATTTTCCATTCAATGCTCTCAAGGAAGAGGGTGACTCCAAGATTTGGCATGCCACTTACATGGGATCACTTTCTTCTAGAAGATATTTGGGTCAAGTTTTTCCCCAACACTTATCAGAGCCATCAATCAAGGTAGATGATACAGACTCTGATGAAAATGACAAAAAGAAGTCAAAGGATGAAGATACATCTATGACTATACCTATAATAGGGGCAATTTTAGGTGCAGCAGTGCTCTTTTTATGTTTTTATCGATTTTGTGGGAGTGGTCGAGTTGCACAAAATGATGAGAGGCCCCTTCTCAGCATGAGCATGAGCTTTAATGACTACTCAGTTGGTTCTTCTTCCAATAAAAATCTATTTAAGAATTCAATGAAAGAGGACCAACTTGGGTTTCAAGTACCAACCAATGCATTGGTTGATGACAAGATGAACTCAATGAAGGAAAGTCAATTAGCAGGAGGAGTTGCTAGTGCTTCTGCAAGACCATCATTTGATTTAAAACCTCCTCCTGGGAGAGTAGTCAGTAATGGTATGCTTCCTTTGAAACCTCCTCCTGGAAGGCCTGATCTTGTTCCTCCTCCTGAGCCATGTCCAATTAAGCCTTCTGATGATGCCATTGTTCCTCCTTCTTCTCCTCCACCACCTCCTCCTCCTCCTCCTCCACCAAAGCCTAGTGGTGGCAGCCCTCCACCTCCTCCACTTCCTAGAGGTGGCGGCCGAGGTCCGCTAGGACCACCACCACCTCCTGGCAATGGCCCTAGACCTCCTCCACCACCACTAGGTAAAGGAGGTGGTCCTAGACCTCCACCACCACCAGGAGGTAGAGGAGGTGGTGGAGGTCCTCCAAGACCACCTCCCCCGTTTGGTTCAAAGGTTTCTAGGACTAAGGAAGAAGTTGTTGAAGAATCTTATGCTTCTAACAAAGCTAAGCTTAAGCCTTTTTTCTGGGATAAGGTTCAAGCTAACTCAGACCAAACAATGGTCTGGAATCAACTCAAAGCAGGATCATTCCAGTTTGATGAAGAAATGATGGAGACGCTTTTTGGCTATAATGCTGCAGCGAGTGTGGATAAAAGCAAAGGCCAACAGAAAAAAGAGGCCCAGCAAGCCACACCTCAATTTATAACGATCATTGACGCAAAGAAATCACAAAATTTATCTATTCTGTTAAAAGCATTGAACGTGACAATAGATGAAGTTGTTGATGCACTTCTTGAAGCTATAATATTAGTATTAGATTCTGCTAGTAAAACACAAGTCACTGATTTATTGGTAGTATCAACAAATGAGCTCCCCACAGAATTCATTCAAACCATAATGAAGATGGCACCAACTCAAGAGGAAGAACTTAAGCTTAGACTTTACACTGGTAGTCCAGCCCAACTTGGGCCTGCAGATAGGTTCCTAAAAGCCCTAGTTGATATTCCATTTGCTTTTAAACGAATGGAGTCACTACTTTACATGGGTGTTCTTCAGGAGGAACTCACTGCTACTCGAGATTCTTTTGCAATTTTAGAGATTGCTTGTAAAACGCTAAGAAGCAGTAGATTGTTCCTCAAGCTTCTTGAAGCTGTTCTCAAAACCGGGAACCGTATGAATGATGGAACATTCCGCGGTGGTGCACAAGCATTCAAACTCGACACACTGCTAAAACTATCCGATGTAAAAGGCGTAGATGGCAAAACCACTCTATTACACTTCGTTGTTCAAGAAATAATGCGAACTGAGGGCATAAGAGCAGCACGCATGGCGAAAGAGAGCCGAAGTTTCTCAAGTATAAAAACAGATGATCTTCTTGAAGACGTTTCTTTCGAATCAGAAGACCATTACCGCGAACTTGGCCTTCAAGTGGTTTCACATTTGAGCACTGAACTCGAGAATGTGAAGAAAGCAGCAGCATTAGATGCTGATGCCATAATAGGAACAACTTCAAGACTAGGCCATGGTTTAATAAAGACGAGAGATTTTGTAAACAAAGACATGGTTGACGTGCAGAATGACAAAGGGTTTCATGAGACAGTGAAGAGTTTTGTGGAGAAAGCTGAGGTTGATGTCATGAGTTTGCTGCAAGAAGAGAAGAGAATCATGGCCCTAGTGAAGAACACTGGTGATTACTTTCATGGAGACTCAGGGAAGGATGAAGGGTTGAGATTGTTTGGAATAGTCCGCAATTTCTTGATGATGTTGGATAAGGTGTGCAGGGAGATAAAGATGAATGCACCAAAGAAGCAGCCAGTGCCACCACCAGTAGGGAATAAAAATGTGAAGACAGAAACTTCTAACCATTCTAGAAAGTCATCTTCCTCAGAAATACATCCTGAGATTCGTCAGAAAATTTCTACAGCAGTGCCAAATAGAATAGTAGATGACTTTAGTTCAGATGATGATGATGAGAGTCCTTAA	2778	0.4194	MAVQQYMGITKAVFCIILAFNVVPIVSIEEKKAQEEFISQLFDPTSGLLTQDTAEVLWITCWEDFIHLKKEVGDLDLCLPKESCRNTNAVSSEIGSVARENIQKLISTCYPQLKENILHCLRKNNFPFNALKEEGDSKIWHATYMGSLSSRRYLGQVFPQHLSEPSIKVDDTDSDENDKKKSKDEDTSMTIPIIGAILGAAVLFLCFYRFCGSGRVAQNDERPLLSMSMSFNDYSVGSSSNKNLFKNSMKEDQLGFQVPTNALVDDKMNSMKESQLAGGVASASARPSFDLKPPPGRVVSNGMLPLKPPPGRPDLVPPPEPCPIKPSDDAIVPPSSPPPPPPPPPPPKPSGGSPPPPPLPRGGGRGPLGPPPPPGNGPRPPPPPLGKGGGPRPPPPPGGRGGGGGPPRPPPPFGSKVSRTKEEVVEESYASNKAKLKPFFWDKVQANSDQTMVWNQLKAGSFQFDEEMMETLFGYNAAASVDKSKGQQKKEAQQATPQFITIIDAKKSQNLSILLKALNVTIDEVVDALLEAIILVLDSASKTQVTDLLVVSTNELPTEFIQTIMKMAPTQEEELKLRLYTGSPAQLGPADRFLKALVDIPFAFKRMESLLYMGVLQEELTATRDSFAILEIACKTLRSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIMRTEGIRAARMAKESRSFSSIKTDDLLEDVSFESEDHYRELGLQVVSHLSTELENVKKAAALDADAIIGTTSRLGHGLIKTRDFVNKDMVDVQNDKGFHETVKSFVEKAEVDVMSLLQEEKRIMALVKNTGDYFHGDSGKDEGLRLFGIVRNFLMMLDKVCREIKMNAPKKQPVPPPVGNKNVKTETSNHSRKSSSSEIHPEIRQKISTAVPNRIVDDFSSDDDDESP	925

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed1g0708	925	MobiDBLite	consensus disorder prediction	275	425	-	-
	Aed1g0708	925	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	426	880	IPR015425	-
	Aed1g0708	925	MobiDBLite	consensus disorder prediction	166	186	-	-
	Aed1g0708	925	Pfam	Formin Homology 2 Domain	431	854	IPR015425	-
	Aed1g0708	925	PRINTS	Proline rich extensin signature	367	383	-	-
	Aed1g0708	925	PRINTS	Proline rich extensin signature	326	338	-	-
	Aed1g0708	925	PRINTS	Proline rich extensin signature	338	359	-	-
	Aed1g0708	925	PRINTS	Proline rich extensin signature	305	321	-	-
	Aed1g0708	925	Gene3D	Formin, FH2 domain	432	874	IPR042201	-
	Aed1g0708	925	SMART	it6_source	426	869	IPR015425	-
	Aed1g0708	925	MobiDBLite	consensus disorder prediction	883	897	-	-
	Aed1g0708	925	PANTHER	FORMIN-RELATED	1	165	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Aed1g0708	925	PANTHER	FORMIN-RELATED	171	921	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Aed1g0708	925	MobiDBLite	consensus disorder prediction	306	414	-	-
	Aed1g0708	925	MobiDBLite	consensus disorder prediction	865	925	-	-
	Aed1g0708	925	PANTHER	FORMIN-LIKE PROTEIN	1	165	-	-
	Aed1g0708	925	PANTHER	FORMIN-LIKE PROTEIN	171	921	-	-
	Aed1g0708	925	MobiDBLite	consensus disorder prediction	165	186	-	-
	Aed1g0708	925	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	497	862	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed1g0708	Aed-Chr1	8253767	8260556	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed1g0708	433	914	FH2 protein (formin) Gene Family	AT5G54650	59.917	0.0	548

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed1g0708	-		-	gmx:100782988	734.561

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed1g0708	1	8253767	8260556	Aed1g0708	1	8253767	8260556	ECH
	Aed1g0708	1	8253767	8260556	Aed5g1033	5	8174602	8183167	PCT