Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0699 ATGGATTCACAACAGCTCTTCAGTTTCGGTGGTGGTGTCACTAGTGCAGGATTCCCATACATGTCATCCTTTCCCACTGTTCCATCTCTACCCTTGAAATACGACACAGGAAACTCACCTAATTCACCCTTTTCCACTTATTTTGATTCTGATGCTCTTTCAGCATTGAGTGACAGCCAGGAGCAATACAGCCCCGGAGAAATCCTCTCTGGTGTCAGCAACTCTTCACTCGAAACCAACCATTATATGTATGGATCACTCTCATCTTTTGACAGTTTCCCACTCTATTCTGGTATGAGCTCTCTTCTACAGAATGTGAGTGGCAATCAGAAAATCCAACACGCTTTGCTTGAGCTAGAAACTGCTCTGATGGCCCCTGATGATGATCAGTTTACCGCGCCGATGGCGTCCGGCCAGAGATACAGGTCCTGGAGCAATGAGAGCCATGTGTCACAACAATATACTCAAACTCAGCCATCATATGTTACCGGCACTAGTAAGCAGACTAGTGAAGTTGTGCATGTAGAGAAACGGCGAAAGTTGATGGAGGAGGAAGCAACACTACAAGCTTTCCCACCAAATGATTTGAGGCAATTGCTGATTGCATGTGCCAAGGCCCTGTCTGAAGACAACATGAAAGATTTTGATCTGTTGGTAGGAAAGGCTAAGGATGCTGTGTCCATCAACGGGGAGCCGATCCAGCGGCTCGGTGCTTACATGGTAGAAGGGCTAGTCGCAAGGATGGAAGCGTCAGGGAACAGCATCTATCATGCCCTCAGGTGCAGAGAACCTGAAGGCGAAGAGCTACTCACTTACATGCAGCTTCTGTTTGAGATCTGCCCCTACTTGAAATTCGGTTACATGGCTGCCAATGGAGCCATTGCAGAGGCGTGCAGAAACGAGGACCGCATACACATCATAGACTTCCAGATTGCTCAGGGAACTCAATGGATGACTCTTCTCCAGGCCCTTGCAGCACAGCCGGGCGGTGCTCCTCATGTCCGGATCACAGGAATTGATGATCCTGTTTCGAAATATGCCCGTGGTGGGATAGAAGTTGTTGGGAAAAGGCTGGCCTTGATGTCTGAGAAATTTGGCATTCCAATTGAGTTTCATGGAGTGCCAGTCTTTGCTCCAGACGTGACAAGGGAAATGCTTGACATAAGGCCAGGAGAGGCCTTGGCTGTGAACTTCCCCTTGCAGCTCCACCACACAGCTGATGAGAGTGTTCATGTGAGCAACCCAAGGGATGGACTTTTGAGATTGGTGAGGTCACTTTCTCCCAAGGTGACCACACTGGTGGAGCAGGAATCAAACACAAACACGAACCCTTTCCTAAACAGGTTCAATGAAACCTTGGATTACTACTTGGCAATCTTTGACTCCATTGATGTAACACTCCCAAGGGACAGCAAGGAGAGGATTAATGTGGAGCAGCATTGTCTGGCCAGGGATATTGTCAACATCATAGCCTGTGAGGGCAAGGAAAGGGTCGAGAGGCATGAACTGTTGGGAAAGTGGAAGTCGAGGTTAACAATGGCTGGCTTTCGTCAGTGTTCTTTGAGCTCTCATGTGAATTCTGTGATAGGAAGCCTTCTGAAGTGCTATTCAGAACATTATACATTAGTGGAGAAGGATGGAGCTATGTTGTTGGGTTGGAGGCACAGAAATTTGATATCTGCTTCAGCATGGCATTGCTAA 1701 0.4785 MDSQQLFSFGGGVTSAGFPYMSSFPTVPSLPLKYDTGNSPNSPFSTYFDSDALSALSDSQEQYSPGEILSGVSNSSLETNHYMYGSLSSFDSFPLYSGMSSLLQNVSGNQKIQHALLELETALMAPDDDQFTAPMASGQRYRSWSNESHVSQQYTQTQPSYVTGTSKQTSEVVHVEKRRKLMEEEATLQAFPPNDLRQLLIACAKALSEDNMKDFDLLVGKAKDAVSINGEPIQRLGAYMVEGLVARMEASGNSIYHALRCREPEGEELLTYMQLLFEICPYLKFGYMAANGAIAEACRNEDRIHIIDFQIAQGTQWMTLLQALAAQPGGAPHVRITGIDDPVSKYARGGIEVVGKRLALMSEKFGIPIEFHGVPVFAPDVTREMLDIRPGEALAVNFPLQLHHTADESVHVSNPRDGLLRLVRSLSPKVTTLVEQESNTNTNPFLNRFNETLDYYLAIFDSIDVTLPRDSKERINVEQHCLARDIVNIIACEGKERVERHELLGKWKSRLTMAGFRQCSLSSHVNSVIGSLLKCYSEHYTLVEKDGAMLLGWRHRNLISASAWHC 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0699 566 Pfam GRAS domain family 196 564 IPR005202 -
Aed1g0699 566 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 32 565 IPR005202 -
Aed1g0699 566 ProSiteProfiles GRAS family profile. 187 565 IPR005202 -
Aed1g0699 566 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 32 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0699 Aed-Chr1 8200626 8202326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0699 116 564 GRAS Transcription Factor Family AT1G50600 54.889 6.28e-171 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aed1g0699 GRAS 4.7e-126 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0699 - - gmx:100817877 981.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0699 1 8200626 8202326 Aed5g1037 5 8215396 8217045 PCT