Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0685 ATGGCAGATGAAGATGATCAATTTCAGGCAAGTGGGAACTGGTGGGAGACAGCAGCAAGGAACGTGAGGTATGATCAGAGTGGAGCATCACAGTCATCTTCCTCAGCCATCACCACCACCACCAACAACAACTTTGGTTGGCAACAACAACAACAACAACAAGCTTCAGATATGGTTGCTGACATGAAGCCAAGGTCTTCTTCCATCATGGATTCTTCTTCTGTGGTTTTCCATGACACACATCAGAATAAGCAGCTTCAGCAGCAGCAACCACCCCCCGATAATTCTGCCACTAATTCCACTGACCCCAACTTGCATATGATGGGCCTAGGCCTTTCATCACAAGCCATGGATTGGAATCAACAAGCTTCTTTGTTAAGAGGAGAGAAGGGCACAGAGAACAGTTTCAGGTCGATGCTGCAAGAGAATTTGAGCACATCAAGGAGAAATTTTCAGCAAGAAACTGGGATGGGGTTGTCTCATCATCATCACCAACAAGTTCAATGGAGGCCAGAGAAGATGTTGTTCTCTGCGGAGTCTTCAACCAATGAGTTCAAGCAAGTGAATATTAATAGGGGTGGTTTCTCATTGGACCAAAGCCAGTTTAGTCCTCAATATAGCTCTGGTGACAGCACAGTCACAAGCCAAGGGTTACCCTCTTCTAACTTTCAGATTGATTCCTCAGCCTTATATGGGACCACTTCAATCTTGCAAGGACTATTGGGTCATGATCATCACAATAACCAACAACAACAAACACCATCTTCTTCCTTTGAGAACCGTCCCATGAGTTTTCCATACCAAACAACAAGCTATGGATTAATAAACTCTAATGAATTGGTGCCTTCTTGGTCCAATAAAGTTCCTCAATTCTTGAGAGCTTCTCCTCCAAAACATCCACCACCCAATAACCAGTTGCATTTCACTAACAACGCAACCTTTTGGAACGCTTCTGAGGCTGCAACTACAAACATCAAAGATGTTAGGCACAGCTTCTTCCCCTCATTGCAACCCCCTTTCTCTACACCAAATTTTGAAGTACAGTCAAAGAATATTTCTGAAGTTAGGGATTCGGGTACTGTGGTAAAGAAAAGTGGGAATGAGCCAGCACCCAAAAGGACCCGTAACGAAACACCATCTCCTATGCCAGCTTTTAAGGTGAGAAAAGAGAAAATGGGGGACAGAATCACTGCACTCCAACAATTGGTGTCGCCTTTTGGAAAGACTGATACAGCCTCAGTGCTCTCTGAAGCCATTGAATACATCAAATTCCTCCATGAACAGGTCACTGCTTTAAGTACCCCGTATATGAAAAGTGGAGCTCCAATACAGATTCAACAGATGCTTTTTCACATGCTTTTGTGCTTTATACCGAATGGCCACATAGATGGTCTTCCATTGGAAGGCTTTGCAGCTATTGGCCAGAGAGCATTTCAAAACGATTTTGTTCTGGTCCAGGTGGATGGCTCCCTAACTATTGCAAAGATGGGGCATCTAGTTAAGCATTTTAATCATTATTATGGTAACCAAGCTAACCTTTCATGGGGATCTACACTTAAACAAAAGAAGATTCTTTCGCAGGCGATGTATAATTTAATTTTGTGGATAGCATTGCGCACCCAGATAGCAGCTGAGTAG 1638 0.4353 MADEDDQFQASGNWWETAARNVRYDQSGASQSSSSAITTTTNNNFGWQQQQQQQASDMVADMKPRSSSIMDSSSVVFHDTHQNKQLQQQQPPPDNSATNSTDPNLHMMGLGLSSQAMDWNQQASLLRGEKGTENSFRSMLQENLSTSRRNFQQETGMGLSHHHHQQVQWRPEKMLFSAESSTNEFKQVNINRGGFSLDQSQFSPQYSSGDSTVTSQGLPSSNFQIDSSALYGTTSILQGLLGHDHHNNQQQQTPSSSFENRPMSFPYQTTSYGLINSNELVPSWSNKVPQFLRASPPKHPPPNNQLHFTNNATFWNASEAATTNIKDVRHSFFPSLQPPFSTPNFEVQSKNISEVRDSGTVVKKSGNEPAPKRTRNETPSPMPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTALSTPYMKSGAPIQIQQMLFHMLLCFIPNGHIDGLPLEGFAAIGQRAFQNDFVLVQVDGSLTIAKMGHLVKHFNHYYGNQANLSWGSTLKQKKILSQAMYNLILWIALRTQIAAE 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0685 545 MobiDBLite consensus disorder prediction 25 107 - -
Aed1g0685 545 CDD bHLH_AtbHLH_like 382 433 IPR045239 -
Aed1g0685 545 PANTHER TRANSCRIPTION FACTOR BHLH123-LIKE ISOFORM X1 20 447 - -
Aed1g0685 545 SMART finulus 387 431 IPR011598 GO:0046983
Aed1g0685 545 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 20 447 - -
Aed1g0685 545 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 386 442 IPR036638 GO:0046983
Aed1g0685 545 MobiDBLite consensus disorder prediction 357 383 - -
Aed1g0685 545 MobiDBLite consensus disorder prediction 199 218 - -
Aed1g0685 545 Gene3D - 386 444 IPR036638 GO:0046983
Aed1g0685 545 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 376 425 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0685 Aed-Chr1 8118015 8123939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0685 127 447 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 44.602 3.37e-54 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0685 - - gmx:100778697 620.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0685 1 8118015 8123939 Aed1g0685 1 8118015 8123939 ECH