Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0682 ATGAGGCAAGCTGGTGCATACTCAGGGTTACTGTGTGGTGGGGTATCAGGAAGGACAGGGCCCCACTCACTGCCCTTGGCAAGGATAAAGAAGATAATGAAGAATTCTGGAGAGGATGTTAAGATGATATCAGGGGAGGCTCCAATTATTTTCTCCAAGGCTTGTGAGCTCTTCATTGAGGAAATTACTAGAAGGTCCTGGATCATGGCCATCCAAGGCAAAAGGAGGACTTTGCACAAAGAGGACTTGGCCTCTGCTGTTGTTGCCACTGATATCTTTGACTTCTTGATCACTTTGGTTTCCAATTCTCACACCAATGATGCACTTGGTGCTGTTACCTCCACCTCCACTTTCATGCATGTTGAAACTATACCTCACTCTTAA 384 0.4583 MRQAGAYSGLLCGGVSGRTGPHSLPLARIKKIMKNSGEDVKMISGEAPIIFSKACELFIEEITRRSWIMAIQGKRRTLHKEDLASAVVATDIFDFLITLVSNSHTNDALGAVTSTSTFMHVETIPHS 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0682 127 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 107 - -
Aed1g0682 127 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Aed1g0682 127 SUPERFAMILY Histone-fold 17 96 IPR009072 GO:0046982
Aed1g0682 127 Gene3D Histone, subunit A 15 102 IPR009072 GO:0046982
Aed1g0682 127 PANTHER HAP5 SUBUNIT OF HAP COMPLEX 1 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0682 Aed-Chr1 8072690 8073073 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0682 22 107 CCAAT-HAP5 Transcription Factor Family AT3G48590 62.791 2.92e-33 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Aed1g0682 CBFD_NFYB_HMF 1e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0682 - - ccaj:109817175 212.616