Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0669 ATGACAAAGTCGTCTTCATCTGGTGAAAAGATTAATGGACTGAAGAAGGGTCCATGGACTCCAGAGGAAGATCATAAACTCATCGATTACATTCAGAAGCATGGCCATGGCAAATGGAGAACCCTTCCCAAAAGTGCAGCCTTTGCATTTATTTTTCATAATACACATAACAGGACTAAAAACTTGAGGCCAGATATAAAGAGAGGAAGATTCTCATTCGAAGAAGAAGAAGCCATCATTCAGTTACACAGTGTTTTGGGAAACAAGTGGTCTACAATTGCTGCTAACTTGCCAGGAAGAACAGATAATGAGATAAAGAATTATTGGAACACCCACATAAAGAAAAAGCTATTGAAGATGGGGATTGATCCAGTGACTCACACACCTCGCCTTGATGTTCTTCAACTTGCATCAATTCTCAACACATCTTTGTACAATTCATCACCAACAACCCAATTGATGAATTACTACCCTTCTGATCTTTCTGGGATTGAAAGATCAGTGATAAATCCAAGCCATTTGCTAAGTTTGCTCACCACTTTGCTCTCATGTCAAAGCAGAAACAACCTTGATCCCTTGAATCATCATAACCAACTTAGTGGTAACTCTCTAATGCAACTTGATTCTACACAAACCTTCCAACCAATCCAATCCCATGTCTCAATTCAAGAAGACCATATTGCTAAGTCTAATTCTAATCCATTGAATATAGAACCCCAAGTTATGAAAACTAAATTAGAGAATCAAATTCAAATCACTCCAATTGCTGCTACCTCTTTTAGCCAACAAAACAGTACACTGCCAAATTTGTGGCACTATAATAATAATGAAGGTCACATATCAGATCTACCATTATCATCAGCTATGCAAATGCAATGTTTATCTTCTCCCAAGTTCAACTCTATATTCAACAATGTCTTGGAAAATCAGAATTTGTGTCATAACAACGAGGGGGTTCCAAATTTCAATTTGAGTTCACTGTTATCGTCCACACCCTCATCATCTTCTAGCCCAAGTACTTTGAATTCGTCATCTTCCACGACATTTGTCAATGGAACAACCACTGAAGATGAAAGGGACAGTACTTACGGCAGCAGCAACATATTGATGTATAACATTTCAAATGGCTTGAATGACTCTGGACTTTTGTGA 1152 0.3802 MTKSSSSGEKINGLKKGPWTPEEDHKLIDYIQKHGHGKWRTLPKSAAFAFIFHNTHNRTKNLRPDIKRGRFSFEEEEAIIQLHSVLGNKWSTIAANLPGRTDNEIKNYWNTHIKKKLLKMGIDPVTHTPRLDVLQLASILNTSLYNSSPTTQLMNYYPSDLSGIERSVINPSHLLSLLTTLLSCQSRNNLDPLNHHNQLSGNSLMQLDSTQTFQPIQSHVSIQEDHIAKSNSNPLNIEPQVMKTKLENQIQITPIAATSFSQQNSTLPNLWHYNNNEGHISDLPLSSAMQMQCLSSPKFNSIFNNVLENQNLCHNNEGVPNFNLSSLLSSTPSSSSSPSTLNSSSSTTFVNGTTTEDERDSTYGSSNILMYNISNGLNDSGLL 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0669 383 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Aed1g0669 383 Gene3D - 70 117 - -
Aed1g0669 383 ProSiteProfiles Myb-like domain profile. 11 61 IPR001005 -
Aed1g0669 383 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 40 IPR017930 -
Aed1g0669 383 PANTHER TRANSCRIPTION FACTOR MYB30-LIKE 1 372 - -
Aed1g0669 383 SMART sant 15 55 IPR001005 -
Aed1g0669 383 SMART sant 67 115 IPR001005 -
Aed1g0669 383 MobiDBLite consensus disorder prediction 328 362 - -
Aed1g0669 383 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Aed1g0669 383 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 372 - -
Aed1g0669 383 CDD SANT 70 113 IPR001005 -
Aed1g0669 383 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Aed1g0669 383 Pfam Myb-like DNA-binding domain 16 44 IPR001005 -
Aed1g0669 383 Gene3D - 13 62 - -
Aed1g0669 383 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0669 Aed-Chr1 7964887 7966481 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0669 12 190 MYB Transcription Factor Family AT4G21440 62.842 1.76e-71 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed1g0669 Myb_DNA-binding 2.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0669 K09422 - gmx:100820398 514.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0669 1 7964887 7966481 Aed1g0669 1 7964887 7966481 ECH