Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0660 ATGGCCACCTCTGACCACCCCGACTCACGTTTCTCACGCATGCACTACTACTTCTCCACCGACGACGAAGACCAGGACGACGACGACGACGACGACAATGACACCGACCTCGACTTCATCGACGACAACAATGTCAGCCCCGCTGAAGAGGATTCCAACAAGAAGTCCGACATTCCCGGAGGCGGCGGAGGCGGAGGTGGAGTCGTTTCTGGGCGGTGGCGGAGAGAGTTTGGGGTGGTGCTGGACCCGAAGGCGAAGTGGGTCCAGGAATGGAACAGGGTGTTCCTGCTGGTGTGCGCGTTGGGGCTGTTCGTGGACCCGCTGTTCTTCTACGCGCTGTCCATAAGCGACACGTGTATGTGCCTCTTCGTCGATGGCTGGCTCGTCATCACCGTCACCGCGCTCCGCTGCATGAGCGACGCGTTGCACGTTTGGAACATGTGGCTGCAGTTCAAGATGGCCAAACGTGTTTCTTCTCTTCTCACATCAACAAGATCAGACACTACTAACGCTTCATCAGCCTCATGCCGTGGCGCCGCCAGTTATGCTCTTCGCACCTTATTCTTTGACCTCTTTGTCATCCTCCCTATTCCCCAGATTGTGCTCTGGGTGGGAATTCCGTCTCTGTTGGAGAAAGGATCAATAACGTTGGTGGTGACAGTGTTCTTAATAATGTTCCTGTTTCAATACCTTCCCAAAATTTATCACTTCGTTTGCCTCTTGTGTCGCATGCAATACCTCTCTGGCTACATTTTCGGAACCGTTTGGTGGGGTATCGCCCTCAACCTCATTGCCTATTTTGTTGCTTCCCATGCAGCAGGGGCATGTTGGTACTTACTGGGGGTGCAAAGAGCAGCAAAGTGCCTAGAGGAACAGTGTGCAAAAACAGCAGGTTGTGGATTGAGAACACTGTGTTGCAAAGTGCCTATATACTATGGAGGGAAAAACATTATAAGAGACAAAACAAGGTTGTTTTGGGCAGAGAACAGAGAAGCAAGGTCTACTTGCTTGGACAGTGCTGATAACTACGAATATGGTGCATTTGAATGGTCTGTTCAACTCGTCACTAATGATAGCCGATTGGAAAAAATACTTTTCCCTATCTTCTGGGGCCTTATGACTCTCAGCACTTTTGGGAGCCTACAGAGCACACCGGAGCGGATAGAAGTGATTTTCAACATTATTGTGTTGACCAGTGGCCTCCTTCTAGTGACTATGTTGATTGGCAACATCAAGGTGTTTTTGCATTCAACAACATCAAAGAAGCAAGCGATGCAATTGAGGATGAGGAACATCGAATGGTGGATGAACAAAACGAGATTGCCACAAGGGTTTAGGCATCGCGTGAGAAACTATGAGAGGCAACGTTGGGCTTCCACGCGTGGGGTTGATGAATGCCAGATAATCAAAAATCTCCCTGAGGGACTAAGAAGGGACATCAAATACCATCTTTGTTTGGATTTGGTCAGACAGGTGCCACTGTTTCAGCATATGGATAATTTGGTACTGGAGAACATCTGTGACCGTGTGAAGTCCCTTGTATTCACCAAAGGAGAAACAGTAAGCTCTTAA 1572 0.4924 MATSDHPDSRFSRMHYYFSTDDEDQDDDDDDDNDTDLDFIDDNNVSPAEEDSNKKSDIPGGGGGGGGVVSGRWRREFGVVLDPKAKWVQEWNRVFLLVCALGLFVDPLFFYALSISDTCMCLFVDGWLVITVTALRCMSDALHVWNMWLQFKMAKRVSSLLTSTRSDTTNASSASCRGAASYALRTLFFDLFVILPIPQIVLWVGIPSLLEKGSITLVVTVFLIMFLFQYLPKIYHFVCLLCRMQYLSGYIFGTVWWGIALNLIAYFVASHAAGACWYLLGVQRAAKCLEEQCAKTAGCGLRTLCCKVPIYYGGKNIIRDKTRLFWAENREARSTCLDSADNYEYGAFEWSVQLVTNDSRLEKILFPIFWGLMTLSTFGSLQSTPERIEVIFNIIVLTSGLLLVTMLIGNIKVFLHSTTSKKQAMQLRMRNIEWWMNKTRLPQGFRHRVRNYERQRWASTRGVDECQIIKNLPEGLRRDIKYHLCLDLVRQVPLFQHMDNLVLENICDRVKSLVFTKGETVSS 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0660 523 MobiDBLite consensus disorder prediction 21 45 - -
Aed1g0660 523 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 5 522 - -
Aed1g0660 523 Gene3D Helix hairpin bin 419 485 - -
Aed1g0660 523 SUPERFAMILY cAMP-binding domain-like 420 521 IPR018490 -
Aed1g0660 523 Pfam Ion transport protein 91 420 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Aed1g0660 523 SUPERFAMILY Voltage-gated potassium channels 86 414 - -
Aed1g0660 523 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 5 522 - -
Aed1g0660 523 MobiDBLite consensus disorder prediction 18 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0660 Aed-Chr1 7908438 7913329 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0660 61 523 Ion Channels AT5G54250 69.742 0.0 663
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0660 K05391 - gmx:100800795 850.121