Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0633 ATGAGCAAAGCCCTCGGAGGAGGAGCAGAAGAAGAAGAAGAAGACGAAGAAGAAGAACAAGACCAAGACCAAGACCAACAAGACCAAGAAGATTGTTTCTACGACTCACACGACCGTTTACTCTCTCTCTCCTCCTCATGCTCCTGCTCCAACTCCAACTCCGACACAGAAAACGACGCCGAAGACCGCCAAAACGACACCACAAGTTTCACCAACTACGACGTATGGATCTCCCAACCTTCCTCCGTTTCAGAACGCCGCAATCGCCTTCTACTCTCTCTCGGACTCTCCTCCCTCACGCGCCCAAACCCGAACCTGAACCCTCTCACTCGCGATCGCGCATCCCCTCTCCGATCCAAATCCGACACCGCAGCCGCCAACCCTAACAAGCCGCCGCCCAATCCGAAACCACCGCCGCCTCCTCCGCCGCCGCCGCCGATTGAGGAGCTCTGCACGATTCGAGATCTCGACAACGGGAAGGAGTTCGTGGTGAACGAGCTCGACAACCTCCGTGAGGTCGCGACGGGGCGGCAATTGACGATGGAGGAGTTCGAGATGACGGTGGTGGGCCACTCTCCAATCGTGCAGGAGCTCATGCGGCGACAGAACGTCGAAGACGCGAACGTCGATTCCAATGCGGGAGGTTCCAAGGTGAAGAAGAAGAAGGGGACAGGGTGGTTGAAGAGTATCAAGAGCGTGGCGAGCTCCGTGGCGGCGTATAGGGATCGCCGGAGCAGCGACGAGAGGGACACCTCGTCGGAGAAGGGGGGGAGGCGGTCCAGCTCCGCCACCGACGACAGCCAGGAGGGCGGCGGGTCGTTCCACGGGCCGGAGAGGGTTAGAGTGAAGCAGTATGGGAAGAGCTGTAAAGAGGTGACTGCTTTGTACAAGAGCCAGGAGATTCAGGCGCACAGTGGGAGCATTTGGAGCATTGAGTTTAGTTTGGATGGCAAGTATTTGGCGAGTGCCGGCGAGGATTGCGTGATTCATGTGTGGCAGGTGGTGGAGGGGGAGAGGAAGGGGGAGTTACTGTTGTTGGATAGGGACAAGGGTGATGATGTCAATGTGAATATGTTTTTGTTGGTGAATGGGTCGCCGGAGCCGACGACGGGGTTGCTCTCGCCGCTCGGGGATGCGGAGAGGAAGAGAAAAGGGAGGTCCAGTGTGGGCAGGAAGTCCTTGAGCTTGGACCAGTTCGTCGTGCCGCCGCACGTATTTGCTCTTACTGACAAACCAGTTTGCTCCTTCCAGGGACATCTCCATGATGTGCTTGATCTCTCATGGTCTAAAACTCAGCATTTGCTCTCATCTTCAATGGACAAAACTGTGCGGCTGTGGCATCTATCTAGCAAGTCTTGTTTGAAAATATTCTCACACAGTGACTATGTAACTTGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATTAGCGGATCTTTGGATGCTAAGGTTCGCATATGGAGCATTCCTGATCGGCAAGTTGTTGATTGGACTGATCTGCATGAGATGGTCACTGCTGCTTGTTATACACCTGATGGTCAGGGTGCACTGGTTGGTTCATACAAGGGTAGCTGCCATCTATATAATACGTCCGAAAATAAGTTGCAACAGAAAAGTCAGATCAATCTGCAGAACAAGAAAAAGAAATCACATCACAAGAAAATTACTGGTTTCCAGTTTGCCCCAGGAAGTTCATCAGAAGTACTTATCACATCTGCTGACTCACGAATTCGGGTTGTTGATGGTGTTGATCTAGTTCACAAGTTTAAAGGCTTTCGGAATGCCAGTAGCCCAATTTCTGCATCCCTTGCGGCAAATGGTAGATATGTTGTTGCAGCAAGTGAGGACTCCCATGTATACATCTGGAAAAACGAAGCTGATTGCAGGCCTAACAGAACTAAAGGTGTCACTGTCACACGATCATACGAACATTTTCACTGTAAAGATGTGTCGGTGGCCATTCCCTGGCCTGGTGTGGGTGATGCATGGGACATGCATGATACATTTTCTGGCGGCGAACAGCCTGAGATTGATAACCATGCTGATGAAGTCTTGTCAGCCAATCACCCTCCTACTCCTGTAGAGGAAAACTTTGTCACCGAGGGTTCGAGGTCTGCATCAGGTTACAGCAACAGCAGTCCACGCCATGCAACCATTGCAAGCGCAACAAATAGTTACTTTTTCGATAGAATTTCTGCAACATGGCCAGAGGAGAAACTTCTTCTGGCTGCAAGAAACCAAAGCCCTCGTGTCAGCATGGATTTCTCTAACGGGGTAAGTCCGAAAATGTCAGCCTGGGGTATGGTGATTGTAACTGCCGGCCTTCGAGGGGAAATCAGAACTTTCCAAAATTTTTGA 2361 0.515 MSKALGGGAEEEEEDEEEEQDQDQDQQDQEDCFYDSHDRLLSLSSSCSCSNSNSDTENDAEDRQNDTTSFTNYDVWISQPSSVSERRNRLLLSLGLSSLTRPNPNLNPLTRDRASPLRSKSDTAAANPNKPPPNPKPPPPPPPPPPIEELCTIRDLDNGKEFVVNELDNLREVATGRQLTMEEFEMTVVGHSPIVQELMRRQNVEDANVDSNAGGSKVKKKKGTGWLKSIKSVASSVAAYRDRRSSDERDTSSEKGGRRSSSATDDSQEGGGSFHGPERVRVKQYGKSCKEVTALYKSQEIQAHSGSIWSIEFSLDGKYLASAGEDCVIHVWQVVEGERKGELLLLDRDKGDDVNVNMFLLVNGSPEPTTGLLSPLGDAERKRKGRSSVGRKSLSLDQFVVPPHVFALTDKPVCSFQGHLHDVLDLSWSKTQHLLSSSMDKTVRLWHLSSKSCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPDRQVVDWTDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSQINLQNKKKKSHHKKITGFQFAPGSSSEVLITSADSRIRVVDGVDLVHKFKGFRNASSPISASLAANGRYVVAASEDSHVYIWKNEADCRPNRTKGVTVTRSYEHFHCKDVSVAIPWPGVGDAWDMHDTFSGGEQPEIDNHADEVLSANHPPTPVEENFVTEGSRSASGYSNSSPRHATIASATNSYFFDRISATWPEEKLLLAARNQSPRVSMDFSNGVSPKMSAWGMVIVTAGLRGEIRTFQNF 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0633 786 MobiDBLite consensus disorder prediction 241 262 - -
Aed1g0633 786 MobiDBLite consensus disorder prediction 97 148 - -
Aed1g0633 786 Coils Coil 9 29 - -
Aed1g0633 786 Gene3D - 282 357 IPR015943 GO:0005515
Aed1g0633 786 SMART WD40_4 294 333 IPR001680 GO:0005515
Aed1g0633 786 SMART WD40_4 409 447 IPR001680 GO:0005515
Aed1g0633 786 SMART WD40_4 537 582 IPR001680 GO:0005515
Aed1g0633 786 SMART WD40_4 492 530 IPR001680 GO:0005515
Aed1g0633 786 SMART WD40_4 450 489 IPR001680 GO:0005515
Aed1g0633 786 SMART WD40_4 583 624 IPR001680 GO:0005515
Aed1g0633 786 Pfam WD domain, G-beta repeat 300 332 IPR001680 GO:0005515
Aed1g0633 786 Pfam WD domain, G-beta repeat 452 489 IPR001680 GO:0005515
Aed1g0633 786 Pfam WD domain, G-beta repeat 411 446 IPR001680 GO:0005515
Aed1g0633 786 Pfam WD domain, G-beta repeat 587 624 IPR001680 GO:0005515
Aed1g0633 786 MobiDBLite consensus disorder prediction 1 69 - -
Aed1g0633 786 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 416 450 - -
Aed1g0633 786 MobiDBLite consensus disorder prediction 39 55 - -
Aed1g0633 786 Gene3D - 398 647 IPR015943 GO:0005515
Aed1g0633 786 ProSiteProfiles Trp-Asp (WD) repeats profile. 456 490 IPR001680 GO:0005515
Aed1g0633 786 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 150 786 - -
Aed1g0633 786 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 23 98 - -
Aed1g0633 786 MobiDBLite consensus disorder prediction 97 127 - -
Aed1g0633 786 SUPERFAMILY WD40 repeat-like 296 626 IPR036322 GO:0005515
Aed1g0633 786 PRINTS G protein beta WD-40 repeat signature 434 448 IPR020472 -
Aed1g0633 786 PRINTS G protein beta WD-40 repeat signature 476 490 IPR020472 -
Aed1g0633 786 PRINTS G protein beta WD-40 repeat signature 320 334 IPR020472 -
Aed1g0633 786 PANTHER WD REPEAT DOMAIN 44 150 786 IPR040324 -
Aed1g0633 786 PANTHER WD REPEAT DOMAIN 44 23 98 IPR040324 -
Aed1g0633 786 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 301 334 - -
Aed1g0633 786 ProSiteProfiles Trp-Asp (WD) repeats profile. 301 342 IPR001680 GO:0005515
Aed1g0633 786 MobiDBLite consensus disorder prediction 9 29 - -
Aed1g0633 786 ProSiteProfiles Trp-Asp (WD) repeats profile. 416 456 IPR001680 GO:0005515
Aed1g0633 786 MobiDBLite consensus disorder prediction 128 148 - -
Aed1g0633 786 MobiDBLite consensus disorder prediction 238 280 - -
Aed1g0633 786 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 456 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0633 Aed-Chr1 7637309 7642982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0633 408 621 U-box Gene Family AT1G04510 27.350 9.17e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0633 K20241 - gmx:100815065 1260.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0633 1 7637309 7642982 Aed1g0633 1 7637309 7642982 ECH