Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0605 ATGGGTTGCATGTGTTGCAAGCCCTCTGCCATTGAAGATAGTAAGGAGAGTCCAAGGGAGCGTTTGTCGAGCAAGGCCGTGTCGGACTTGTGTGTATCCAGGGGGACTTCATCAAGGAGGGAGGAGGCGTTTCGGGTAAAGGATAGATATGATAACAATGAGGGAAGAACTGCATTGATTGATAAGCAAGGAAATGGTTCTGTTAGAGTGCAAGGTGAGAGTTTTGAAAGGAAGAGGGAGAAAATGGAATATGCTGTTGTTCAACAACATCCAGGGATTGGTAGTGTTCCTAAGGCCATGGAAGGTGAGCAGGTTGCAGCTGGATGGCCCTCATGGCTGGCAGCAGTGGCTGGAGAGGCTATCAAGGGATGGTTGCCGCGCCGTGCTGATTCTTTTGAGAAGTTGGATAAAATTGGACAGGGAACTTATAGCAATGTTTATAGAGCTCGTGATCTTGAACAAAGAAAGATTGTTGCTTTGAAAAAAGTGAGGTTTGATAATCTAGAACCTGAGAGTGTTCGCTTCATGGCAAGGGAAATTCACATTCTACGTAGGCTTGATCATCCAAATGTCATAAAACTGGAAGGCTTGGTTACGTCAAGGATGTCTTGCAGTTTATACCTTGTCTTTGAGTACATGGAGCATGACTTGGCAGGGCTTGCATCACATCCTGGACTGAAGTTTACAGAAGCACAGGTTAAATGTTACATGCAGCAACTTTTACGTGGACTTGATCACTGCCACAGCTGTGGTGTACTGCACCGTGACATTAAAGGTTCCAATCTTTTGATTGACAACAGTGGGATATTGAAAATTGCAGACTTTGGTTTGGCAAGCTTTTTTGATCCCAATCAAGCTCAACCATTGACAAGCCGAGTTGTCACTCTTTGGTATAGGCCCCCAGAGCTTTTGCTTGGAGCCACTTACTATGGCACCGCCGTAGATTTATGGAGTACTGGTTGCATACTTGCTGAGCTGTATGCTGGCAAGCCTATAATGCCTGGAAGAACTGAGGTGGAGCAATTACATAAAATTTTTAAACTTTGTGGTTCACCTTCTGAGGACTATTGGAGAAAATCAAAATTGCCTCATGCAACAATATTTAAGCCTCAACAACCCTATAGGCGATGTGTTTCTGAAACATTCAAGGACTTTCCTGCACCTGCAATAGAATTGATAGAGACCCTTTTGTCTGTAGATCCTGCTGATCGTGGAACTTCAACATCTGCTTTGAATAGTGAGTTCTTTTCAACGAAGCCTCTACCTTGTGATCCCTCAAGCTTACCAAAGTATCCTCCTAGCAAAGAATTTGATGCCAAAGTGCGGGATGAAGAAGCGAGGAGACAAGGAGCAGCAGGAAGCAAGGGCCAGAGACATGATCTTGAGAGACGAGGTGCAAGAGAATCACGAGCAGTTCCTGCACCTGATGCCAATGCTGAACTTGTCTTGTCAATGCAGAAGAGACAAGGGCAAGCTAATTCTCAGAGCAGGAGTGAGAAGTTTAACCCTCATCCTGAAGAAGTTGCTTCTGGATTTCCCATTGATCCCCCTAGACCATCACAAGCTGCAGCAGTAATTGCGGATCCCCCAGTTCATCAACATAAAAGAGCCTCCCATTCAGGTCCACTGACTCACCGTGCGGCATGGGCTAAAGCCGGGAAGAACCAAGACGATGCTCCAAAGATTTCAATGGGGGGTGACTTATCAACGGTATCAGGCTTAGTTGCAGCAAGGAGGAGTATGTTATCTGACGATCGCAGAGAAAGGTCTGGATCATCACAAGCAGAGGCCCCGAAACTAATAAGCAGGTTCCCAGGATCCTTCAAGGAGGCTTATGAGTCAATGATGCAACAGGATCAGAAGCATCATGCACATGCTCCTCAAAAGGAAGAAGGGAGAAGCAGCAGCAACAACAAAGAGTCAAATCTTGTTGGTTATGGCTCCAAGGGCCATAAAATCCATTATTCTGGTCCTCTCCTAGTTCCGTCAAGCAACACGGATCAGATGTTGAAGGACACGACCGCCAAATCCAAGAGGCGGTTCGAAGAGCTCGGTTGGACAAGGCAAAGATGA 2073 0.4602 MGCMCCKPSAIEDSKESPRERLSSKAVSDLCVSRGTSSRREEAFRVKDRYDNNEGRTALIDKQGNGSVRVQGESFERKREKMEYAVVQQHPGIGSVPKAMEGEQVAAGWPSWLAAVAGEAIKGWLPRRADSFEKLDKIGQGTYSNVYRARDLEQRKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGLKFTEAQVKCYMQQLLRGLDHCHSCGVLHRDIKGSNLLIDNSGILKIADFGLASFFDPNQAQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRRCVSETFKDFPAPAIELIETLLSVDPADRGTSTSALNSEFFSTKPLPCDPSSLPKYPPSKEFDAKVRDEEARRQGAAGSKGQRHDLERRGARESRAVPAPDANAELVLSMQKRQGQANSQSRSEKFNPHPEEVASGFPIDPPRPSQAAAVIADPPVHQHKRASHSGPLTHRAAWAKAGKNQDDAPKISMGGDLSTVSGLVAARRSMLSDDRRERSGSSQAEAPKLISRFPGSFKEAYESMMQQDQKHHAHAPQKEEGRSSSNNKESNLVGYGSKGHKIHYSGPLLVPSSNTDQMLKDTTAKSKRRFEELGWTRQR 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0605 690 Gene3D Transferase(Phosphotransferase) domain 1 215 455 - -
Aed1g0605 690 MobiDBLite consensus disorder prediction 422 509 - -
Aed1g0605 690 MobiDBLite consensus disorder prediction 615 636 - -
Aed1g0605 690 SMART serkin_6 132 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g0605 690 PANTHER CELL DIVISION PROTEIN KINASE 1 674 - -
Aed1g0605 690 MobiDBLite consensus disorder prediction 435 470 - -
Aed1g0605 690 Pfam Protein kinase domain 132 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g0605 690 ProSiteProfiles Protein kinase domain profile. 132 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g0605 690 MobiDBLite consensus disorder prediction 484 499 - -
Aed1g0605 690 SUPERFAMILY Protein kinase-like (PK-like) 126 424 IPR011009 -
Aed1g0605 690 Gene3D Phosphorylase Kinase; domain 1 119 214 - -
Aed1g0605 690 CDD STKc_CDK9_like 132 416 - -
Aed1g0605 690 MobiDBLite consensus disorder prediction 579 690 - -
Aed1g0605 690 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Aed1g0605 690 MobiDBLite consensus disorder prediction 672 690 - -
Aed1g0605 690 ProSitePatterns Protein kinases ATP-binding region signature. 138 161 IPR017441 GO:0005524
Aed1g0605 690 PANTHER CYCLIN-DEPENDENT KINASE 1 674 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0605 Aed-Chr1 7430898 7436632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0605 124 473 Core Cell Cycle Gene Families AT5G10270 51.913 2.43e-120 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Aed1g0605 Pkinase 3.5e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0605 - - gmx:100792173 1304.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0605 1 7430898 7436632 Aed1g0605 1 7430898 7436632 ECH