Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0604 ATGTGTTGTTGTGCTTGGCCTACATGCAACTCTAGCTGGATGAAGATGGAGGGTTCTTCTGGGTCTGCTTTTCAGAATTCTGGCAGTTCTAGGGCTTTGAATAGTTCTAGAGTCTCAGATAGGAACCAAAGGGTTCATTGTCCTGCAAGGAACCCGTACTCGGGTGAGGCATCACAGGATTTGGGGTTTAGAAAGGAAAGGGATAGGGTTCTGTTGGCTCAAGGTGGCCAGCTGAAAAGTTTGGGCGGTGGGGGTTCGGGGTTGTGTGATGATGAGGTGGAGGTTGACCCCTTCTTTGGTGCTGTAGAATGGGGTGATATTAGCTTGAGGCAATGGTTAGATAAACCTGAACGATCAGTGGACGCCTTTGAATGCTTGCACATATTTAGGCAAATAGTAGAGATTGTTAGTGTAGCACATTCTCAAGGAGTTGTAGTTCACAATGTGAGGCCTTCCTGCTTTGTCATGTCATCTTTCAACCGTATCTCGTTTATTGAATCAGCATCTTGTTCAGATACTGGATCGGATTCTTTGGGAGATGGAATGAACAACCAAGGCAGTGAGGCTAAAACTCCGACATCTCTCTGTCCCCATGATATGCATCAGCAGAGTTTGGAAAGTGAAGATTTCATGCCTGCCAAGACTTCAACCACCCCTGCTCGGTCAGATTCTAGTTGCATGCTTTCGAGTGCTGTGTATGCAGCTCGTGCATCATTAATAGAAGAAACAGAAGAAAATAAAATGAAAGATAGGAGAAAGGATGAAGAAGTAGAAGGAAAGAAGCAATCATTTCCAATGAAACAGATACTGCTAATGGAGATGAGTTGGTACACTAGTCCTGAAGAGGTTGCTGATGAATCTAGTTCTTGTGCTTCAGACGTTTATCGATTGGGGATTCTCCTTTTTGAGCTATTTTGTCCGCTCAGCTCAAGAGAAGAAAAGAGTAGGACCATGTCTAGCCTTAGACACAGAGTTCTTCCTCCACAGTTACTTCTAAAGTGGCCTAAAGAAGCTTCATTTTGCTTATGGTTACTACATCCTGACCCAAGTAGTCGTCCAACACTGGGCAGGGAGTTGTTGCAGAGCGAGTTCCTTAATGAACAGAGAGATGATATGGAAGAACGTGAGGCAGCGATAGAGCTGAGACAAAGGATAGAGGATAAGGAATTGTTGTTAGAATTCCTTTTATTACTTCAACAGAGAAAACAGGAAGTTGCTGAGAAGTTGCAACATACTGTCTCTTTTCTGTGTTCAGATATTGAAGAAGTGACCAAGCAGCAAGTTAGATTTAAAGAGATTACTGGTGCTGAACTGGGGAGTGGAGAGCATTCAACATCAAATTTCCCATCCATGACAGTTGTTGATAGTGAGGATTCTGCTTGTCTTGGGGCTAGAAAACGAGTCAGACTAGGAGGGAGGGATGTTAAAAACATTGAAGAATGTGACAATGATGTAGGGGACGATCAGAAAAGTAACAGAAGTTTTCTTTCAAAAAGTTCACGGCTAATGAAGAACTTCAAGAAATTTGAGTCAGCATACTTTTTAACCCGATGTAGACCAGCCTATTCCTCTGGGAAACTGGCGGTTAGACATCCACCTGCAACAAGTGATGGTAGAGGGTCTGTTGTCGTGACTGAAAGAAGTTGCATCAATGACTTGAAATCTAAAGAGCAGAGCAGGGACGGTGCAAGTGCTTGGATAAATCCTTTTCTTGAGGGTTTGTGCAAGTATTTATCATTCAGTAAGCTGAAGGTTAAGGCTGACCTAAAGCAAGGAGATCTTTTGCATTCTTCCAACCTAGTATGCTCACTCAGTTTCGATCGTGATGGAGAATTTTTTGCTACTGCCGGTGTGAATAAGAAAATAAAAGTGTTTGAATGTGATTCAATCATAAATGAAGATCGTGATATCCACTATCCAGTTGTGGAGATGGCTAGCAGGTCAAAGTTAAGCAGTATATGTTGGAATACATACATCAAAAGTCAAATTGCTTCAAGTAACTTTGAAGGTGTTGTACAGTTATGGGATGTGACAAGAAGTCAAGTAATCTCTGAAATGAGGGAGCATGAGCGGCGGGTGTGGTCTATAGATTTCTCATCAGTGGACCCAACAATGTTGGCAAGTGGGAGCGATGACGGTTCTGTCAAGCTATGGAGCATCAATCAGGCAATTCCATTTTTGCACTTGGTGGAATGTCAGCTTTGA 2205 0.4286 MCCCAWPTCNSSWMKMEGSSGSAFQNSGSSRALNSSRVSDRNQRVHCPARNPYSGEASQDLGFRKERDRVLLAQGGQLKSLGGGGSGLCDDEVEVDPFFGAVEWGDISLRQWLDKPERSVDAFECLHIFRQIVEIVSVAHSQGVVVHNVRPSCFVMSSFNRISFIESASCSDTGSDSLGDGMNNQGSEAKTPTSLCPHDMHQQSLESEDFMPAKTSTTPARSDSSCMLSSAVYAARASLIEETEENKMKDRRKDEEVEGKKQSFPMKQILLMEMSWYTSPEEVADESSSCASDVYRLGILLFELFCPLSSREEKSRTMSSLRHRVLPPQLLLKWPKEASFCLWLLHPDPSSRPTLGRELLQSEFLNEQRDDMEEREAAIELRQRIEDKELLLEFLLLLQQRKQEVAEKLQHTVSFLCSDIEEVTKQQVRFKEITGAELGSGEHSTSNFPSMTVVDSEDSACLGARKRVRLGGRDVKNIEECDNDVGDDQKSNRSFLSKSSRLMKNFKKFESAYFLTRCRPAYSSGKLAVRHPPATSDGRGSVVVTERSCINDLKSKEQSRDGASAWINPFLEGLCKYLSFSKLKVKADLKQGDLLHSSNLVCSLSFDRDGEFFATAGVNKKIKVFECDSIINEDRDIHYPVVEMASRSKLSSICWNTYIKSQIASSNFEGVVQLWDVTRSQVISEMREHERRVWSIDFSSVDPTMLASGSDDGSVKLWSINQAIPFLHLVECQL 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0604 734 Gene3D Transferase(Phosphotransferase) domain 1 106 375 - -
Aed1g0604 734 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 686 721 - -
Aed1g0604 734 MobiDBLite consensus disorder prediction 20 58 - -
Aed1g0604 734 Pfam WD domain, G-beta repeat 596 625 IPR001680 GO:0005515
Aed1g0604 734 Pfam WD domain, G-beta repeat 683 719 IPR001680 GO:0005515
Aed1g0604 734 SUPERFAMILY Protein kinase-like (PK-like) 98 359 IPR011009 -
Aed1g0604 734 Gene3D - 572 731 IPR015943 GO:0005515
Aed1g0604 734 SMART WD40_4 591 626 IPR001680 GO:0005515
Aed1g0604 734 SMART WD40_4 637 676 IPR001680 GO:0005515
Aed1g0604 734 SMART WD40_4 679 719 IPR001680 GO:0005515
Aed1g0604 734 Coils Coil 362 382 - -
Aed1g0604 734 SMART serkin_6 13 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g0604 734 PANTHER PROTEIN SPA1-RELATED 3 16 723 - -
Aed1g0604 734 SUPERFAMILY WD40 repeat-like 597 722 IPR036322 GO:0005515
Aed1g0604 734 MobiDBLite consensus disorder prediction 20 42 - -
Aed1g0604 734 ProSiteProfiles Trp-Asp (WD) repeats profile. 686 721 IPR001680 GO:0005515
Aed1g0604 734 PANTHER PROTEIN SPA1-RELATED 2 16 723 IPR044630 GO:0009640
Aed1g0604 734 ProSiteProfiles Protein kinase domain profile. 1 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g0604 734 MobiDBLite consensus disorder prediction 176 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0604 Aed-Chr1 7421275 7427832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0604 596 720 Miscellaneous Gene Families AT5G08390 29.600 3.28e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Aed1g0604 WD40 0.00023 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0604 - - gmx:100811457 1315.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0604 1 7421275 7427832 Aed5g1160 5 9989196 9995978 ECH
Aed1g0604 1 7421275 7427832 Aed1g0604 1 7421275 7427832 ECH