Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0582 ATGGAGATCAAGAGTAGTAGAGAGAGGAGGCAAGTGTCAATTGAGAAGGTGAGGAGAGACAGCACAGTTGAAGTAGAAGATGAAGAAGAAGAGGAGGATGAAAGTGTGGCTGGACTTGCAGAATTAGATGAGAGGAAGAAAGGTGGTGGTGGTGGTGGAGGAGGGAGTGGGAGAAGAGGGTCAAGTGGAGGAGTTTCTCAACCTTCTTGTCAAGCAGAGATGTGTGGTGCTGATTTGACTCTTGCAAAGAGGTACCATCGCCGCCATAAGGTGTGTGAGCTTCATTCCAAGGCACCTTCTGCCATGGTTGCTGGACTGAGGCAGAGGTTCCATGAGCTGGCAGAGTTTGATGAAGCTAAAAGAAGCTGCCGGAGACGCTTGGCGAGACACAACGAGAGGCGCCGGAAAAGCAATGCTGAAACTTGCAATGAAGGATGCAGTGGCAGCAATGGGCAGCAGCACCCTACAGAAAGCCACTGCAGAAATACTGATGACTGGAGAAGAATTCAGATGAACATTGCAAAGAATTCTGGCCTCAAGGCCTTCCATATCAGATGA 558 0.4946 MEIKSSRERRQVSIEKVRRDSTVEVEDEEEEEDESVAGLAELDERKKGGGGGGGGSGRRGSSGGVSQPSCQAEMCGADLTLAKRYHRRHKVCELHSKAPSAMVAGLRQRFHELAEFDEAKRSCRRRLARHNERRRKSNAETCNEGCSGSNGQQHPTESHCRNTDDWRRIQMNIAKNSGLKAFHIR 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0582 185 Gene3D - 60 124 IPR036893 GO:0003677|GO:0005634
Aed1g0582 185 MobiDBLite consensus disorder prediction 1 70 - -
Aed1g0582 185 MobiDBLite consensus disorder prediction 24 38 - -
Aed1g0582 185 Pfam SBP domain 70 136 IPR004333 GO:0003677
Aed1g0582 185 MobiDBLite consensus disorder prediction 1 23 - -
Aed1g0582 185 MobiDBLite consensus disorder prediction 128 160 - -
Aed1g0582 185 ProSiteProfiles Zinc finger SBP-type profile. 67 137 IPR004333 GO:0003677
Aed1g0582 185 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 12 185 IPR044817 GO:0003677
Aed1g0582 185 MobiDBLite consensus disorder prediction 141 157 - -
Aed1g0582 185 Coils Coil 113 133 - -
Aed1g0582 185 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 12 185 - -
Aed1g0582 185 SUPERFAMILY SBT domain 68 141 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0582 Aed-Chr1 7282873 7285996 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0582 8 152 SBP-box Gene Family AT3G60030 46.203 6.87e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Aed1g0582 SBP 7.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0582 - - gmx:100815775 260.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0582 1 7282873 7285996 Aed9g0551 9 3838550 3840284 ECH
Aed1g0582 1 7282873 7285996 Aed1g0582 1 7282873 7285996 ECH