Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0575 ATGGCTCCAAGAGACAGAGCCACCGCACTCGTCGGACCCGGCCCAAACCCAGGCCCATCGCCGGCCCACAAAGAGATCCGCTACCGCGGCGTCAGGAAACGCCCCTGGGGCCGCTACGCCGCCGAGATCCGCGACCCCGGGAAAAAAACCCGCGTCTGGCTCGGCACCTTCGACACCGCTGAGGAAGCAGCGCGCGCCTACGACAACGCCGCGCGTGAGTTTCGTGGCGCAAAGGCCAAGACCAATTTCCCGACACCCTCGGAACTCATCCTTAACCACAACAACATGGCGCGCAGTCCCAGCCAGAGCAGCACCTTAGATTCCTCCTCACCACCGCCGCTGGACCTCACACTCTCCTCGGCCGTTTTCCCGGTCGCGCGTCCCGTTCTCTTCTTCGACGCGTTCGCGCGTGCGGACACCGTGATCGCCGTCGGCCGCCGCGAGATGTGCTGCTTCGAACGCTCCGTTGCGGACTGCCGCCGCGGCGATTCCGATTCTTCCTCCGTCGTTGGCGATTACGAGCGCCGCCGCGGACTCTTGGATCTCGACCTCAACGTGCCGCCGCTTCCTGAGGTTGCGTGA 582 0.6546 MAPRDRATALVGPGPNPGPSPAHKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDNAAREFRGAKAKTNFPTPSELILNHNNMARSPSQSSTLDSSSPPPLDLTLSSAVFPVARPVLFFDAFARADTVIAVGRREMCCFERSVADCRRGDSDSSSVVGDYERRRGLLDLDLNVPPLPEVA 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0575 193 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Aed1g0575 193 Pfam AP2 domain 27 76 IPR001471 GO:0003700|GO:0006355
Aed1g0575 193 Coils Coil 60 80 - -
Aed1g0575 193 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 121 - -
Aed1g0575 193 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 125 182 - -
Aed1g0575 193 CDD AP2 27 84 IPR001471 GO:0003700|GO:0006355
Aed1g0575 193 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
Aed1g0575 193 Gene3D AP2/ERF domain 26 85 IPR036955 GO:0003700|GO:0006355
Aed1g0575 193 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Aed1g0575 193 PRINTS Ethylene responsive element binding protein signature 50 66 IPR001471 GO:0003700|GO:0006355
Aed1g0575 193 PANTHER ERF FAMILY PROTEIN 1 121 - -
Aed1g0575 193 PANTHER ERF FAMILY PROTEIN 125 182 - -
Aed1g0575 193 SUPERFAMILY DNA-binding domain 27 85 IPR016177 GO:0003677
Aed1g0575 193 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0575 Aed-Chr1 7228066 7228647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0575 24 133 AP2-EREBP Transcription Factor Family AT3G15210 65.152 1.90e-47 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed1g0575 AP2 3.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0575 K09286 - gmx:100813652 261.922