Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0562 ATGGATCAAATCACGGATTCAGAAATGGATCAACAACAGAGACAAGGTCATCATCATCATCATCATTCTGAACCCTGTATCCTTGCTAGAGAAGCAACTAACATCTCAAGGCCTAACAATAACCATGCAATAGTGAGAGATTCCGGGAATAATGCAACCAATGTTGTTGATTCTTACTTTCCACAATACAACAATGGCAGCATTCATCCTTCACATAATAATCTTGATATGGCTGTACCAGTTACAGCTAACTTATACTATTCTGGCATGAATCCTTCTTCTTCTTCAAGCACCGGTGTCTTCCACCCGCCTCTAATTAATCATCAACGAGCATCAAGTCAGTTGTCGGGTTCAAGCACATTCGCGATCACTGGAGGAGGTTCTTCCAACAATTTTGGAAGTTCTAGCTTCATGGATGATGCTAGAGGTCCATACAAAAGGAAAAATCCAGAAGGGATAAGAGGAAATTTTCAAGATTTCAATGCTGCTGCTTCATCTAGTTCTTCAATTTCTGCCCCTAATGCAAGACAAGCTGATGGTACTGTTGTTGCTGCTATGATGGACACTACACCGTTTCCTATCCCTTCACTTGTGGAAGTAGGGCCACATGGTAGTGCTTGGAACAGGGCTGGTGAGTCTATTATGGTGCATGATCATAATAATCATTTGATCCATGGAAACTATTTAGGGCAACACTTTCAGCCTTTTGCTCCTCCATGGTTGTTCCAACAATTGAATAGTAACAATAATGATGCCCACACTACACCTTGGAATCAGTCTCTTCCAATGCCTTGTGTACAAGCACCTGCTATAAATAGAAGTTCATTAGAGAGTGTAAGTATGGGTTTGCAAAGATATCATCATGATCCTACAGCTGGAAACCGAAACGGGTTCAGGTTTCCTCATCATATTCCTGTCAACCAACAACAACACCATAACAATTATCATCATTCACCAACACTGCCTGCTATGCAAGGAGTAAGAGAACAACATAACAATATCAACATCAACTTTCACCCTTCTGCAGCAATAACTACAAACTCATTTAGAGTTCCAACAAATCCTTTGCGCAGTGTTGCAATCCCAACAACACCAACTGGTTTTGAGATGGGTCCTAGACATGTTGGCCCTGCACCATCAGCTGGCCTCTGGATTTACCGACCTCATCGAGGGTTTGATCTCCTTGCATTGGGTGAAAGAATTGGCAATGTAAACACTGGTTTAACAGAAGAAACAATTATAACTCAATTGAAGACAAAAACTTATTTAACACCTGCTACTGATATTAATCTGGAGGAGGAAGCTTGTGATGATCAGGAAGCAGAATCTTGTATAATATGCCAGGATGAATTCAAGAACCAAGAGAAGATTGGAGTTATTCAATGTGAGCATGAATATCATGCAGATTGCTTAAGAAAATGGTTGGTGGTAAAAAATGCTTGTCCCATATGCAAATCAGAAGCTTTGACTCTTTGA 1476 0.4058 MDQITDSEMDQQQRQGHHHHHHSEPCILAREATNISRPNNNHAIVRDSGNNATNVVDSYFPQYNNGSIHPSHNNLDMAVPVTANLYYSGMNPSSSSSTGVFHPPLINHQRASSQLSGSSTFAITGGGSSNNFGSSSFMDDARGPYKRKNPEGIRGNFQDFNAAASSSSSISAPNARQADGTVVAAMMDTTPFPIPSLVEVGPHGSAWNRAGESIMVHDHNNHLIHGNYLGQHFQPFAPPWLFQQLNSNNNDAHTTPWNQSLPMPCVQAPAINRSSLESVSMGLQRYHHDPTAGNRNGFRFPHHIPVNQQQHHNNYHHSPTLPAMQGVREQHNNININFHPSAAITTNSFRVPTNPLRSVAIPTTPTGFEMGPRHVGPAPSAGLWIYRPHRGFDLLALGERIGNVNTGLTEETIITQLKTKTYLTPATDINLEEEACDDQEAESCIICQDEFKNQEKIGVIQCEHEYHADCLRKWLVVKNACPICKSEALTL 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0562 491 MobiDBLite consensus disorder prediction 1 24 - -
Aed1g0562 491 ProSiteProfiles Zinc finger RING-type profile. 444 485 IPR001841 -
Aed1g0562 491 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 406 489 IPR013083 -
Aed1g0562 491 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 393 490 - -
Aed1g0562 491 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 134 374 - -
Aed1g0562 491 SMART ring_2 444 484 IPR001841 -
Aed1g0562 491 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 393 490 IPR045191 GO:0061630
Aed1g0562 491 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 134 374 IPR045191 GO:0061630
Aed1g0562 491 Pfam Ring finger domain 443 485 IPR001841 -
Aed1g0562 491 SUPERFAMILY RING/U-box 443 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0562 Aed-Chr1 7140253 7144423 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0562 393 489 C3H Transcription Factor Family AT2G15530 43.878 2.14e-24 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0562 K19041 - gmx:100800642 576.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0562 1 7140253 7144423 Aed1g0562 1 7140253 7144423 ECH