Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0556 ATGGGCAGCATAAATATGTTTGTTACTCTCCTTTGTTTGATGAGCATCCTAAAATTTGCTTTAGGAAATAAAACTAATGGCACAAACACAAACACAAACACGATAGGAGTTATTACAGACAACAACTCTCGCAACGGTAAAGAGGAGATAGTGGCAATTAAGATGGCATTCGAGGATTTCTATCATAATACCAATCAAAGCTTTGGTCTTCACATAAGGAACTCACATGGGGATCCCCTTCAAGCTGTCCTTGCAGCTAGAGATCTTATTGATACACAGCACGTAGAAGCAATAATAGGACCCCAAACATGGGAAGAGACAACTCTAGTGGCCGAGATTTGTAGCCAAAACATGACACCAGTTCTATCTCTAGCTGATGCAACTCCTCCAAACTGGTCAACTTTGAAGTGGCCATTTCTATTGCAAGCCTCACCTAATCAGTTTAAGCAGATGAAAGCAGTGGCAGCTATTGTTCATTCCTATGAATGGTACGATGTTAACATAATATATGAAGACAAGGATTCTTCATCCACAAGAATGTTGTCTCATCTCTATAGAGCTCTTGACCAAGCAGATGTACAAATAAGCAATGTTTTGGCCATCCCTTCTTTAATTTCACTGTCCCAAGAACTTGAGAGGCTTATAGATGGCCATTGCAGAGTCTTTGTTGTTAATTTGTCCCTTCCTTTGGCCATAGACTTGTTTGAAACTGCGAAAAAACTGAACATGATGGATAAAGGCTATGTTTGGATCATCACTGATCCTTTTACAAGTCTTGTCCATTCCTTGAAAGCATCCACTGTATCCTCCTCAATGCAAGGGATAATTGGAGTAAAGAGCTACTTTCCAGAAATAGGGGTTCAATATGAGGATTTCCACCTTAAATTTCGCGAAAAGTTTAGTTCAGAGAATCCTCATGAATTTAACAATGAGCCTGGAATATTTGCAGCACTTGCTTATGATGCTGCATGGACTCTTGCGGTGGCCATGAGCCAAACCATCAGTAAAGGGGGGAAATTTTTACTAGATAAGGTTCTGCTAAATAATTTTACTGGCTTAAGTGGAAAAGTTCAGTTCACCAACCAGAGGTTAGATCCTTCAGATACTTTTCAGATCATCAATGTGATAGGGAAAGGTTACAAGGAAATTGGATTCTGGTCAGATGGAGTAGGTTTCTCAGATGATATTGGCCAAAATGCTAGTTTCAATTCTTCAATGAAGGAACTAGGACAAGTTTTATGGCCAGGAAGACCCTGGGGAAATCCAACAGGATGGACTCAGCCAACAAGGGATAACATGCCACTAAGAATTGGGATCCCCGTTTTGGCGTCACTGAAACAATTCATACATGTGATTCAAGACCAAACTGAAAATACTAGCACCTACCAAGGATTCACTATTGGTCTTTTTACAGCAACTATGGAGTTGTTGCCCTATCATGTTCCATTCGAATTCTACCCTTTCAATGGCACATATGATAATTTGGTGAAGCAAGTTTATTTGAAGAATTTCGATGCAGTAGTTGATGTGACAATAATGTCATATCGATATCAGTATGCAGAATTCACTCAGCCATACACTGAACCGGGAGTGATGATGGTAGTCCCTCTTAAATCAAAAGTAGCACATAGAGCTTGGTTATTTATGAAACCTTTTACAAAGACTATGTGGCTTATAATATTGGCCATGGTTATCTACACTGGCTTTATTCTTTGGATATTGGAAAGACACCACCACAGTCCTGAAGTTCGAGGGGACAAGTTACACAGCAATTTATCAAAGATGGTTATGGTGGTTTGGTTGTTTGTGGCACTTATCATAACACAGACTTACACTGCTAACCTTGCCAGCATGCTAACTGCTGAACGGCTTGAACCTACTGTAGATGATATTGATCAGCTAAGGAATAGCAACACCAAAGTTGGATATGGAACAGGATCCTTTTTGGAAAATTATGTGCATAAAGTGTTACAGTTCCACCCTGAAAACATGAGGCACTTTGGAGCACTTGAAGAGTATGCTGAAGCTTTCAGAAGGAAAGAAATTGGAGCTGCCTTTCTTGAAGTTCCTATAGCCAAAATTTTCCTTGCAAAGTACTGTAAAGAGTTTGTTCAAGCCGGGTCTTTGGATAAAACTGGAGGATTTGGATTTGTACGTGAGTTAGAGAACAAAATGCTTGCATCAGAGGAATGTGAAGACAAAGGACAAGATGGAGAAGAAGCTGGAAGTCTTGGCCCCAACAGCTTCTGGGCACTCTTCATGTTCACAACAGGCACATCAACAATTGCTCTCTTGGTTTATGTTTTTCGCATGATTATGCTAACCGTGATGAGACAAACAATATTACGGAGACTACCAATGATGATCATTCAACAATGTGGCCATGCAAAGAGGAGAATCTCAAGAAAAATTAGTGATGTTGCAGAAAGTCCTATGGCCTCTCCAACCACACATGCTACGCCAACTCAATCCAAGCCAAAAGGTGGAGGAGTCAATATGGAGCTGTGTGGATCTTGCTGGAATCCACAGTAA 2532 0.4036 MGSINMFVTLLCLMSILKFALGNKTNGTNTNTNTIGVITDNNSRNGKEEIVAIKMAFEDFYHNTNQSFGLHIRNSHGDPLQAVLAARDLIDTQHVEAIIGPQTWEETTLVAEICSQNMTPVLSLADATPPNWSTLKWPFLLQASPNQFKQMKAVAAIVHSYEWYDVNIIYEDKDSSSTRMLSHLYRALDQADVQISNVLAIPSLISLSQELERLIDGHCRVFVVNLSLPLAIDLFETAKKLNMMDKGYVWIITDPFTSLVHSLKASTVSSSMQGIIGVKSYFPEIGVQYEDFHLKFREKFSSENPHEFNNEPGIFAALAYDAAWTLAVAMSQTISKGGKFLLDKVLLNNFTGLSGKVQFTNQRLDPSDTFQIINVIGKGYKEIGFWSDGVGFSDDIGQNASFNSSMKELGQVLWPGRPWGNPTGWTQPTRDNMPLRIGIPVLASLKQFIHVIQDQTENTSTYQGFTIGLFTATMELLPYHVPFEFYPFNGTYDNLVKQVYLKNFDAVVDVTIMSYRYQYAEFTQPYTEPGVMMVVPLKSKVAHRAWLFMKPFTKTMWLIILAMVIYTGFILWILERHHHSPEVRGDKLHSNLSKMVMVVWLFVALIITQTYTANLASMLTAERLEPTVDDIDQLRNSNTKVGYGTGSFLENYVHKVLQFHPENMRHFGALEEYAEAFRRKEIGAAFLEVPIAKIFLAKYCKEFVQAGSLDKTGGFGFVRELENKMLASEECEDKGQDGEEAGSLGPNSFWALFMFTTGTSTIALLVYVFRMIMLTVMRQTILRRLPMMIIQQCGHAKRRISRKISDVAESPMASPTTHATPTQSKPKGGGVNMELCGSCWNPQ 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0556 843 Pfam Receptor family ligand binding region 52 376 IPR001828 -
Aed1g0556 843 SMART GluR_14 436 728 IPR001320 GO:0015276|GO:0016020
Aed1g0556 843 Pfam Ligand-gated ion channel 724 757 IPR001320 GO:0015276|GO:0016020
Aed1g0556 843 MobiDBLite consensus disorder prediction 810 827 - -
Aed1g0556 843 Gene3D - 146 387 - -
Aed1g0556 843 PIRSF IGluLR_plant 718 828 IPR017103 -
Aed1g0556 843 PIRSF IGluLR_plant 3 589 IPR017103 -
Aed1g0556 843 PIRSF IGluLR_plant 582 719 IPR017103 -
Aed1g0556 843 Gene3D - 41 365 - -
Aed1g0556 843 SUPERFAMILY Periplasmic binding protein-like I 34 423 IPR028082 -
Aed1g0556 843 CDD GluR_Plant 434 718 - -
Aed1g0556 843 PANTHER GLUTAMATE RECEPTOR 26 717 - -
Aed1g0556 843 PANTHER GLUTAMATE RECEPTOR 717 820 - -
Aed1g0556 843 CDD PBP1_GABAb_receptor_plant 35 396 IPR044440 -
Aed1g0556 843 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 26 717 - -
Aed1g0556 843 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 717 820 - -
Aed1g0556 843 Gene3D - 437 543 - -
Aed1g0556 843 Gene3D - 587 664 - -
Aed1g0556 843 Gene3D - 544 586 - -
Aed1g0556 843 SUPERFAMILY Periplasmic binding protein-like II 412 726 - -
Aed1g0556 843 MobiDBLite consensus disorder prediction 807 829 - -
Aed1g0556 843 Pfam Bacterial extracellular solute-binding proteins, family 3 459 723 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0556 Aed-Chr1 7095555 7100724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0556 5 824 Ion Channels AT2G29110 30.176 4.12e-118 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0556 - - var:108332761 1178.31