Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0554 ATGGCAAAAACGAGGCCAGGCAGAAAAGACTTGGATTCCTACACCATAAGAGGCACCAACAAGATCGTAAGAGCTGGGGACTGTGTGCTGATGCGCCCCTCTGATACCAGCAAGCCCCCCTACGTTGCGCGTGTGGAGAAGATTGAGCAGGATAATAGAAACAATGTGAAGGTGCGCGTGAGGTGGTATTACAGGCCTGAAGAGTCTATTGGAGGACGCAGGCAGTTCCATGGAGCGAAAGAGCTGTTTTTGTCTGACCATTATGATACCCAGAGTGCTCACACAATTGAAGGGAAGTGTATTGTGCACTCCTTCAAGAACTATACCAAACTTGAGAATGTAGGGGCTGAGGATTACTATTGTAGGTTCGAGTACAAGGCCGCCACTGGGGCTTTCACCCCTGACCGTGTTGCTGTGTACTGCAAGTGCGAGATGCCTTATAATCCAGATGACCTCATGGTGCAGTGTGAAGGGTGCAAGGATTGGTACCATCCTGCTTGCGTGGGCATGACCATTGAAGAAGCAAAGAAATTGGATCATTTTGTTTGTTCAGAATGTTCATCTGATGATGACATAAAGAAACCCCAGGCTACATTTCCTGTATCACCAGGATCTGATTGCAAGATAGTGATGGGATCTTTGTTGAGCCAAAGCGGCGGAAGAGAGGACCATAACGCAAAATTAACTCATCTTGGGAATGCAACACTTGCTGAAATTCGCTGGCGATGTGGTAGCTGTTGTGTGTGTATTGTACAGCTTCTACCAGAGGCTATAAAATATCATTTTATGTATTTGACTCAGGCTATGTATGTATCCGTCTTAGATTTATGA 831 0.4621 MAKTRPGRKDLDSYTIRGTNKIVRAGDCVLMRPSDTSKPPYVARVEKIEQDNRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDTQSAHTIEGKCIVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDHFVCSECSSDDDIKKPQATFPVSPGSDCKIVMGSLLSQSGGREDHNAKLTHLGNATLAEIRWRCGSCCVCIVQLLPEAIKYHFMYLTQAMYVSVLDL 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0554 276 ProSiteProfiles Zinc finger PHD-type profile. 138 189 IPR019787 -
Aed1g0554 276 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 199 IPR013083 -
Aed1g0554 276 SMART PHD_3 140 187 IPR001965 -
Aed1g0554 276 Pfam PHD-finger 140 188 IPR019787 -
Aed1g0554 276 CDD BAH_BAHCC1 22 156 - -
Aed1g0554 276 PANTHER OS08G0421900 PROTEIN 3 228 - -
Aed1g0554 276 SUPERFAMILY FYVE/PHD zinc finger 132 191 IPR011011 -
Aed1g0554 276 PANTHER BNAC03G64850D PROTEIN 3 228 IPR045205 GO:0006325|GO:0035064
Aed1g0554 276 Pfam BAH domain 23 135 IPR001025 GO:0003682
Aed1g0554 276 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682
Aed1g0554 276 ProSitePatterns Zinc finger PHD-type signature. 141 186 IPR019786 -
Aed1g0554 276 SMART BAH_4 21 136 IPR001025 GO:0003682
Aed1g0554 276 Gene3D - 2 132 IPR043151 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0554 Aed-Chr1 7073524 7077233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0554 31 138 Core DNA Replication Machinery Family AT4G14700 30.275 6.99e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aed1g0554 BAH 2.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0554 K25868 - gmx:100800993 439.499