Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0545 ATGGGGTCACCATTCAAGTCCATCTCATGCACTCCATACAGAATAGAAACCAAGAACTTGTCATACAAGTTGTGCAGCCAGCTTGATGAGTATAGAAGAAGCCTTTGTTTTGGTTCCATTAATCCAGGAAGAGGTGCCAAGTTCATTTTGAAGGATGTGAATTGCGAGGCAAGGCCGGGGGAGATCACTGCTATTGCTGGCCCTAGTGGAGCTGGAAAAACCACACTGCTTGAGATTCTTGCCGGGAGAATAACACCCTCTTGTAACAAACTTTCTGGCCAAGTTATTGTCAATCATAGGCCTATGGATGTGAAGCAATTCAGAAGAACATCGGGGTATGTCACACAAGATGATGCCTTGTTCCCATCACTGACAGTTAGAGAGACACTCATGTATAGTGCCATGCTGAGGCTTCCTGGTGGGAGAAAAGTTGCTGCCATCAGAGTTCAAGAGTTGATGAAGGAGCTTGGATTAGACCACATTGCAGATTCAAGAATTGGAGGTGGATCAGACCACCACGGCATATCTGGCGGTGAGAGGCGTAGAGTTTCCATTGGTGTGGACTTGGTTCATGACCCTGCTGTTATTTTGATCGATGAGCCAACTTCAGGGTTGGATTCAGCATCAGCTCTTGGTGTGGTCTCATTGCTTAGGCTTGTGGCATTTAACCAAGGTAAGACGATTATCTTAACCATCCACCAACCTGGTTTCCGAATCCTGGAGCTATTTGATGGCCTCATTTTGCTGTCTGATGGATTTGTGATGCATAATGGATCATTGAATCTTCTTGAGGCTAGGCTCGAGTTAGCCGGGCACCACGTTCCTGATCATGTCAATGTCCTCGAGTTTGCTCTCCATGTCATGGAAAGCTTGGTTATACACACTTCAGAATCTGGGGACAGCCAGTTTCTGCTAAAAGAGAACCAAGATCACAAAATGAGGATGCAACAACAGTACTCTAAGGTCGTCAAAGAAAAGTCACTTGTGTACTCAAATTCTCCAATTGAGGAGATATCAATCCTGGGACAAAGGTTTTGCTGCAACATATTCAGAACAAAGCAACTCTTTGTCACTAGGGTCATACAAGCCTTAGTAGCTGGTTTCATACTAGGGAGCATTTTTTTCAATGTTGGCAATCAACAAAGTCATGTGGCATTGCAAACTAGAAGTGGCTTCTTTGCTTTCAGCCTTACCTTTTTGTTATCATCAACAACAGAAGGCTTGCCTATTTTCTTGGAGGAGAGGAGGACCTTTATGAGAGAAACCTCAAGAGGAGCTTATAGAGTTTCGTCCTATGTTTTAGCAAATATCCTTGTGTTCCTTCCTTTCCTTCTGTTGGTTGGTCTTCTGTTCTCTACTCCAGTTTATTGGCTTGTAGGATTAAGGAAAGACATTGATGGTTTCTTTTACTTCTCCTTGGTGGTTTGGTTGGTCCTACTCATGTCGAATTCTCTTGTGGCTTGTTTCAGTGCTCTAGTGCCAAATTTCATCTTGGGAACCTCTGCGATTGCAGGTCTAATGGGGTCTTTTTTTCTGTTCTCAGGGTATTTCATATCAGAGGAGAAGATACCAAGTTACTGGATCTTTATGCACTATTTGAGCCTATTCAAGTATCCATTTGAGTGCCTTGTGATAAATGAATATGGGGGAGAACAAGGGAAAACGAGATGCTTAGAAATTAGCAATGGAGAATGCATACTATATGGAGCTGAATTCTTAAGACAACAGGGTCTGAGAGATTCACAAAAATGGACCAATTTGGCAATAATGTTGAGCTTCATAGTTGGGTATAGAGTGCTTAGCTTTTTTATTCTTTGGTTCAGATGTTACAGGACCAGAAAATAG 1845 0.4287 MGSPFKSISCTPYRIETKNLSYKLCSQLDEYRRSLCFGSINPGRGAKFILKDVNCEARPGEITAIAGPSGAGKTTLLEILAGRITPSCNKLSGQVIVNHRPMDVKQFRRTSGYVTQDDALFPSLTVRETLMYSAMLRLPGGRKVAAIRVQELMKELGLDHIADSRIGGGSDHHGISGGERRRVSIGVDLVHDPAVILIDEPTSGLDSASALGVVSLLRLVAFNQGKTIILTIHQPGFRILELFDGLILLSDGFVMHNGSLNLLEARLELAGHHVPDHVNVLEFALHVMESLVIHTSESGDSQFLLKENQDHKMRMQQQYSKVVKEKSLVYSNSPIEEISILGQRFCCNIFRTKQLFVTRVIQALVAGFILGSIFFNVGNQQSHVALQTRSGFFAFSLTFLLSSTTEGLPIFLEERRTFMRETSRGAYRVSSYVLANILVFLPFLLLVGLLFSTPVYWLVGLRKDIDGFFYFSLVVWLVLLMSNSLVACFSALVPNFILGTSAIAGLMGSFFLFSGYFISEEKIPSYWIFMHYLSLFKYPFECLVINEYGGEQGKTRCLEISNGECILYGAEFLRQQGLRDSQKWTNLAIMLSFIVGYRVLSFFILWFRCYRTRK 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0545 614 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 268 IPR027417 -
Aed1g0545 614 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 15 276 IPR003439 GO:0005524
Aed1g0545 614 SMART AAA_5 59 253 IPR003593 -
Aed1g0545 614 Pfam ABC-2 type transporter 337 548 IPR013525 GO:0016020|GO:0140359
Aed1g0545 614 ProSitePatterns ABC transporters family signature. 175 189 IPR017871 GO:0005524
Aed1g0545 614 Pfam ABC transporter 50 203 IPR003439 GO:0005524
Aed1g0545 614 PANTHER ABC TRANSPORTER G FAMILY MEMBER 10 4 606 - -
Aed1g0545 614 CDD ABCG_EPDR 42 258 - -
Aed1g0545 614 Pfam ABC-2 type transporter 233 317 IPR043926 GO:0140359
Aed1g0545 614 Gene3D - 15 280 IPR027417 -
Aed1g0545 614 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 4 606 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0545 Aed-Chr1 7005366 7007210 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0545 42 268 Calmodulin-binding Proteins AT2G36910 27.119 1.27e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0545 K05681 - gmx:100807754 1078.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0545 1 7005366 7007210 Aed1g0545 1 7005366 7007210 ECH