Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0543 ATGTCAGTAGAGATGTTGATCAACAACGAAATAGAGGATTTATATGATGATAACTTTGAAGGATCTAACGAAGAAAGACAGATTTTTTCAGAAGTCTTTTCTGGTAATGGCATTTTTCAGTCTAGTCAGAAGAGTCTTGTTCCTGTAGCCATCAACTTTGAAGGTGAATCCGCTAAAAACACATTCAAATCATTCTGCTCTAATAATGAAAATTCAGTTGTATTTCATCCCTCATCTTCTAGAATTATACACCACGAAGAGGAGGACTTTAATGTAATTCAGCATTCCAAGGAGATTGCTCTGGGGTGTGTGCCAGAGAGTTTCATTTATGAAGACCAGAATGATGAGGATGTGAATGTCAAACGTATGAAATTTTCTCTGCATGAACTTGCTTGTAGTAGATCTGATTCAGAAAAAAAATTGAGTTCATCACGACTTTCAAAAGTAGTAGTTTCTAACCTGTCTTGTGCTGCTACAGGTTGTAATAGTGAACCAATTGCATTTCGTTTAGTTGAATCATCTAAAAATGGTGTGATATCTAGTTGTTATCTGTTGAACCATAACAAGTTAAATAAACAAGCTCCTAAAGATGATGTAGATGCTACAAACTTTAACTCAACAAAAGCAGATGGAAATATTGCAAAAGAGGTGTCTATAAGCATAGCAGCTGCTTCTCCTGTTTCCCAGGAAAGCTTTGCAAACAGGCTTGTAGTTACAAATCCGTCAACCACTGTTGTGAAGAAGTTTGGGTCTCCTTTAAATCCTGAGGAAATGCCGGAATCTTCTAATGTGGACATCTCAAATTCATCCTCAATGCTAGAGGGAGAGGACCCTCGTACTATACTGCAGTTTCATATTGTGCAGCTGCTTACGATGGCAGGATGGTCTATTGAGAAGCGTCAACGGCGTTGTAGGCGTTACCCGGAGTCAGTTTATAGGACACCAGAGGGAAAGCCTGTTCGGGAGTTTACAAAGGCTTGGAGATTATGTGGTGAGCTATTGTCTGTTGGAAACTGCAATTTTATGTGTAGAGATTATAAGGAATGGACTGATGTTAGTCAATTCTGGTCTGATCTATCCAGTGCACTCTTAAATGTTGACAAAACACAGATGCAGTCAGAAGACCCTGCTGCTATATTGGCTTATCGATGGTTGCTTTTGGATCCTTTTGTAGTAGTTATATTTGTTGATAGAAAGATTGGTGCGCTGAAAAGGGGAGAGGTAGTGAAAGCAACTTGGAGTTTAGTTTCTAGCAAGTGTAAGGTGGCATGTGCTCCTATTTGTTCAAGCTCTGAAACTTTGAATCAGTTACCTGGAGGGTCTAATGTAAATGCTGTTCATCAAGCCAAAGTTAGAAATTCCAAAAGTGTTGATAAACAAAGTTCAGAAAACTATCTGGAAACCAACAAAGTTATTGATGGAGATGTGCCAATAGACATGTCAGAAGAAAATAATGCATCTGGTGTGAGCCATGGCCTGGTTCATTCTCATGGCTCAAGGGCTATGCAACAGTCTGAATGTAGTGAGGAAGAGGGTGGCAAAATCTCAGTAGATTCTGTATTTGGGAAAGATAATAAATATTCTGTTTCTAATGTTATTCTTAAAAAGAAAATGCGGAGGAAGTGTAAAAGGGTATCTGAAATCAAACTGAGTATGATCTACCATAGTGAGATGCTGGGCTCAAGTATTACTGACCAGGTGCAATCACTGGATGGTGAAGCAAGTGGGTTGGAAGAGGCTCAGGATGATCTAGCTGACAATGTGGGGAAGAAAAGAAACTGCAGAAAGTTATCATCTGTTGGTGCAATTCAGAGAAATATTAGGAAAACAAACTGCCCCATAGCTGGAACAGATAAGTCTAACAGATGCCAGATTAAAGACGATGATTTATTGGTGTCTGCAATATTCAGGAATAAGGACTTCAGCTCAAAGGCAATCCGAGTTAATTCTAGTGCTAAATCCTGCAAATCAAGGGGTCAGAGAAAGCTTAAAAGCCAAAAGGGCCGTTGCAGGTTGCTACCAAGGAATCCATGTAATGGAGGGAAGCACAATAAGGAATTGAATAGGATTTATTTGGGTGCAAGGACAATATTGTCCTGGTTGATTGATAAAGGGGTCATAGCTTTAAATGATGTCATTCAATACCGAAATCCTAAGGATAATGTTGTCATTAAGGATGGTAGGATCACCAAAGATGGTATTATTTGTACATGTTGTGGTAAGGTGCTCACATTATCAGAGTTCAAGTTTCATGCTGGGTTTACACTGAATCGCCCCTGCTTGAATATTTTCATGGAGTCTGGTAAGCCCTTTACACTGTGCCTCCTTCAAGCTTGGTCAGCAGAATACAAAGAAAAGAAAAGCCAGAATCAAGCTGTAGATGCTGAGGATAATGATAAAAATGATGATTCGTGCGGGTTGTGTGGTGAGGGGGGTGAGCTGATATGTTGTGATAACTGTCCATCTACTTTTCACCTAGCTTGTTTGTCCACTCAGGAGATCCCCGATGGTGACTGGTACTGCACAAGCTGCACGTGTAGGATATGTGGAAATTTGGTCATGGATAAAGACCCTTCAGATGTGCATAATTCATTACAATGTTCACAGTGTGAACATAAATGTAAGTATGCCCTGGTAGTTGATCTGAGTCTCCTTAAATGCCACAATAATCATGAGAAATGCCTGAAAGATAGAGATAAACAAGAAGGAGCAGTTTCAGACACTTGGTTTTGTGGTCAGAGTTGTCAGGAGATCAAATTTGACAGCTTTTCAAAGCCATACAAAATGTGGAAGATTCTAGCCGTGACTTATTCAGTATACTCTGGACTCCAGTCTCAGGTGGGGTTAGTTAATCAAGTTGCTGATGGCATCTCATGGTCCCTTCTTAGATGCATCCATGATGACCAAAAAGTTCACTCTGCACAGTGGTTTGCCCTAAAGGCAGTATGCAATACAAAATTAGCCCTTGCTCTTACTATCATGGAGGAGTGTTTTGTGTCAATGTTTGATCCAAGAACAGGCATCCACATGATACCCCAAGTTTTATACAACTGGGGGTCTGAGTTTGTTCGTCTGAACTATCAAGGGTTTTACACCATCGTATTGGAGAAACAGGATGTGTTAGTATCTGCAGCATCTATCAGGGTGCATGGAACTACAGTAGCAGAGATGCCTCTAATTGCAACTTGCAGTCAGTATCGTCGCCAGGGAATGTGCCGCCTCCTAGTGAGTGCAATCGAACAGATGTTAATATCTTTCAAGGTGGAAAAGCTTGTGGTATCAGCCATTCCAGACTTGGTTGAGACTTGGACAAAGGGCTTTGGATTTGTACTTGTTGATGACATTGAAAGGCTAAGATTGAAAAAAATGAACTTGATGGTTTTTCCTGGGACAGTGTTACTTGCAAAATCCTTATATGGGAAGGATAAAATTGAAGCTGAAACAGGACTGTGTGATCAATCAACTCTAGCAACAGAAGAATCAATCAAAGCAGGTATTTGTTCTGATGGAATGACCATTACTGAATCATTGGCACAAGATATTGGAAACACAACTACCAGCAAAGGTGAAGCAAAGTCAGAACATGAACCTGTAGATGGCAAAAATCCATCAGACTATGAAGCTGGCAATGAAACTGGCAGAGATGATAAAACACAAACTGTTGACAGTGCATTAGAAGCCAAAGAATCAACAGAAATAAGTAGCTCTTCTAAAGAGAAGATCACCCACTTGGAAGTGTCAGGTGGCTCTTCTACTGAAGAAAACATTGCGAAGGAATTGAGAACAAGCAACAAAGCAGAAGTGGCACGTGATTCAGTACAGCAATCTAGTGAGAATTGTTGTGGTGACAAAGGTGGTGCTGAACCAGGTGTTAGTATTGTTGAGGACAAGAATATCAAAATAGGTGAGGGTCAGGAAAATGCTTTGCAGGGCCATTTTTCAAATTTGTCCTGCAAAACATTTTTAGGCAGCAATTTTGACATGGATTCCAATATTGAATGCTCAGTGATGTATGATGAAACAGCTTTTTTTGGGACTTTTGCAAAGTCTGCAAGCTGA 4059 0.4013 MSVEMLINNEIEDLYDDNFEGSNEERQIFSEVFSGNGIFQSSQKSLVPVAINFEGESAKNTFKSFCSNNENSVVFHPSSSRIIHHEEEDFNVIQHSKEIALGCVPESFIYEDQNDEDVNVKRMKFSLHELACSRSDSEKKLSSSRLSKVVVSNLSCAATGCNSEPIAFRLVESSKNGVISSCYLLNHNKLNKQAPKDDVDATNFNSTKADGNIAKEVSISIAAASPVSQESFANRLVVTNPSTTVVKKFGSPLNPEEMPESSNVDISNSSSMLEGEDPRTILQFHIVQLLTMAGWSIEKRQRRCRRYPESVYRTPEGKPVREFTKAWRLCGELLSVGNCNFMCRDYKEWTDVSQFWSDLSSALLNVDKTQMQSEDPAAILAYRWLLLDPFVVVIFVDRKIGALKRGEVVKATWSLVSSKCKVACAPICSSSETLNQLPGGSNVNAVHQAKVRNSKSVDKQSSENYLETNKVIDGDVPIDMSEENNASGVSHGLVHSHGSRAMQQSECSEEEGGKISVDSVFGKDNKYSVSNVILKKKMRRKCKRVSEIKLSMIYHSEMLGSSITDQVQSLDGEASGLEEAQDDLADNVGKKRNCRKLSSVGAIQRNIRKTNCPIAGTDKSNRCQIKDDDLLVSAIFRNKDFSSKAIRVNSSAKSCKSRGQRKLKSQKGRCRLLPRNPCNGGKHNKELNRIYLGARTILSWLIDKGVIALNDVIQYRNPKDNVVIKDGRITKDGIICTCCGKVLTLSEFKFHAGFTLNRPCLNIFMESGKPFTLCLLQAWSAEYKEKKSQNQAVDAEDNDKNDDSCGLCGEGGELICCDNCPSTFHLACLSTQEIPDGDWYCTSCTCRICGNLVMDKDPSDVHNSLQCSQCEHKCKYALVVDLSLLKCHNNHEKCLKDRDKQEGAVSDTWFCGQSCQEIKFDSFSKPYKMWKILAVTYSVYSGLQSQVGLVNQVADGISWSLLRCIHDDQKVHSAQWFALKAVCNTKLALALTIMEECFVSMFDPRTGIHMIPQVLYNWGSEFVRLNYQGFYTIVLEKQDVLVSAASIRVHGTTVAEMPLIATCSQYRRQGMCRLLVSAIEQMLISFKVEKLVVSAIPDLVETWTKGFGFVLVDDIERLRLKKMNLMVFPGTVLLAKSLYGKDKIEAETGLCDQSTLATEESIKAGICSDGMTITESLAQDIGNTTTSKGEAKSEHEPVDGKNPSDYEAGNETGRDDKTQTVDSALEAKESTEISSSSKEKITHLEVSGGSSTEENIAKELRTSNKAEVARDSVQQSSENCCGDKGGAEPGVSIVEDKNIKIGEGQENALQGHFSNLSCKTFLGSNFDMDSNIECSVMYDETAFFGTFAKSAS 1352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0543 1352 MobiDBLite consensus disorder prediction 1240 1257 - -
Aed1g0543 1352 PANTHER PHD FINGER PROTEIN 12 466 1350 IPR042163 GO:0003714|GO:0045892
Aed1g0543 1352 MobiDBLite consensus disorder prediction 1267 1281 - -
Aed1g0543 1352 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 977 1131 IPR000182 GO:0016407
Aed1g0543 1352 MobiDBLite consensus disorder prediction 1183 1288 - -
Aed1g0543 1352 PANTHER INCREASED DNA METHYLATION 1 466 1350 - -
Aed1g0543 1352 Coils Coil 776 796 - -
Aed1g0543 1352 SUPERFAMILY FYVE/PHD zinc finger 790 846 IPR011011 -
Aed1g0543 1352 SMART PHD_3 804 845 IPR001965 -
Aed1g0543 1352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 788 890 IPR013083 -
Aed1g0543 1352 PANTHER PHD FINGER PROTEIN 12 5 465 IPR042163 GO:0003714|GO:0045892
Aed1g0543 1352 MobiDBLite consensus disorder prediction 1189 1223 - -
Aed1g0543 1352 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 988 1115 IPR016181 -
Aed1g0543 1352 MobiDBLite consensus disorder prediction 250 270 - -
Aed1g0543 1352 Gene3D - 994 1124 - -
Aed1g0543 1352 MobiDBLite consensus disorder prediction 256 270 - -
Aed1g0543 1352 Pfam PHD-finger 805 846 IPR019787 -
Aed1g0543 1352 PANTHER INCREASED DNA METHYLATION 1 5 465 - -
Aed1g0543 1352 ProSiteProfiles Zinc finger PHD-type profile. 802 847 IPR019787 -
Aed1g0543 1352 CDD PHD1_AIRE 805 844 - -
Aed1g0543 1352 Pfam Tify domain binding domain 727 777 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0543 Aed-Chr1 6987295 6995471 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0543 5 1151 PHD Transcription Factor Family AT3G14980 39.658 0.0 741
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aed1g0543 TDBD 9.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0543 - - gmx:100795889 2226.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0543 1 6987295 6995471 Aed1g0543 1 6987295 6995471 ECH