Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0526 ATGTCGCTGAGGAAGGTCTTCCGCTCCCGCAAGTTCTCCAGATCGTTCAAGGATGCGATGCCGGCGGCGGACTCCGCCGTTGTCGGCGGCGAGGGCGGGGTCGCCGGCGAGGAGGTGGCAAATGAGAATGGGTGGGCCAGCATGCTGCCGGAGATCCTCGGCGAGATCGTAAGGCGTGTGGACACCGTGGAGGACCAGTGGCCCAACCGCCAAAACGTCGTCGCATGCGCCTGCGTCTGCAAGCGGTGGCGTGACATCACGCGCGAGGTCGTGCGTGAGCCTAAGCACACCGGGAAAATCACTTTCCCGGCGTGCCTTAAACAGCCAGGACCACGAGAAGTTCCCCACCAATGTCTTATAAAGCGGAACAAGAAGACCTCCACGTTTTATCTATATCTTGCCCTTACACCATCATTCACAGATAAAGGGAAGTTTCTGCTAGCAGCTAGGAGATATAGGTGTGGTACCCATACCGAGTATATAATTTCACTCGATGCTGATGACTTATCCCAAGGAAGCAATGCTTATGTTGGAAAGTTAAGCTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCATAGTGGTGCAAAACCATCGAGTGGCAGGGCCAGCCGTCGGTTCGCCAGCAAGCAGATAAGCCCACAAGTTCCTGCAGGTAACTTTGAGGTGGGGCAGGTCTCCTACAAGTTCAACCTTTTGAAATCGAGAGGGCCAAGGAGAATGGTTTCCACATTGAAGTGTCCCGTGACTCCTGTCTCATCAAAGGGTGAAAGTTCAAACAGCATGTCTGTCGATGGCAATAAGATGCATGATAAAGATCTCGCTGCACCCGGCTACACAATCTTGAAGAATAAAGCTCCAAGGTGGCATGAGCATTTGCAATGTTGGTGCTTGAATTTCCATGGCCGTGTGACAGTGGCCTCAGTGAAGAACTTTCAGCTGGTTGCAACAGTGGACCAAAGCCAGCCAGGAGGGAAAGGAGACGAGGACATAACTCTCCTCCAGTTTGGTAAAGTAGGGGATGATACTTTCACCATGGATTATAGACAGCCCTTATCTGCTTTCCAGGCTTTTGCCATTTGCTTAACTAGCTTTGGCACTAAACTTGCTTGTGAGTGA 1134 0.5185 MSLRKVFRSRKFSRSFKDAMPAADSAVVGGEGGVAGEEVANENGWASMLPEILGEIVRRVDTVEDQWPNRQNVVACACVCKRWRDITREVVREPKHTGKITFPACLKQPGPREVPHQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRYRCGTHTEYIISLDADDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHSGAKPSSGRASRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVSTLKCPVTPVSSKGESSNSMSVDGNKMHDKDLAAPGYTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEDITLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0526 377 SUPERFAMILY Tubby C-terminal domain-like 95 377 IPR025659 -
Aed1g0526 377 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 4 377 - -
Aed1g0526 377 Gene3D Tubby Protein; Chain A 101 377 IPR025659 -
Aed1g0526 377 ProSitePatterns Tub family signature 1. 305 318 IPR018066 -
Aed1g0526 377 PRINTS Tubby superfamily signature 287 304 IPR000007 -
Aed1g0526 377 PRINTS Tubby superfamily signature 305 321 IPR000007 -
Aed1g0526 377 PRINTS Tubby superfamily signature 225 252 IPR000007 -
Aed1g0526 377 PRINTS Tubby superfamily signature 176 200 IPR000007 -
Aed1g0526 377 PRINTS Tubby superfamily signature 334 353 IPR000007 -
Aed1g0526 377 PRINTS Tubby superfamily signature 355 377 IPR000007 -
Aed1g0526 377 PRINTS Tubby superfamily signature 160 176 IPR000007 -
Aed1g0526 377 Pfam Tub family 106 372 IPR000007 -
Aed1g0526 377 Pfam F-box domain 50 91 IPR001810 GO:0005515
Aed1g0526 377 ProSitePatterns Tub family signature 2. 362 377 IPR018066 -
Aed1g0526 377 PANTHER TUBBY-RELATED 4 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0526 Aed-Chr1 6857272 6861703 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0526 1 377 TUB Transcription Factor Family AT1G53320 71.615 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Aed1g0526 Tub 2e-100 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0526 K19600 - gmx:100808096 666.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0526 1 6857272 6861703 Aed1g0526 1 6857272 6861703 ECH