Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0524 ATGAAGAGGAACGGTTTCATGAAAGACTACACTAGTACTCAAAGTTGTGCCAACAACAACAAGAACCACCCAACAACAAAAGATCACTTCTCCCATGTTTCCAACTCCTACAACAACAGCAATATTATTAATGCAGATTATGAGGAGTATGTGAATGGCTTTCCATGGCCACCAAGATCATACACTTGCAGCTTCTGCAGAAAGGAGTTCAAGTCTGCTCAAGCACTTGGTGGACACATGAATGTTCATAGGAGAGATAGAGCAAGGTTGAGGCAGCAGTCACCACCAACTCAAGCTCAAGCTCAAGGCCCTTTGCTCAACCTTAACCTTAACCCTAACAACAACAACTCAACATCTTCATCTTCAACAACTACTCTAAAGCCTCTTGTCACTTGCACTACATTACCCTTGTTTGTTTCTCCCACTACTGCTACTCCAGCTCCTTCTGCACCTTCTTCTCATGAGTTGAATAAGAGATTGATTGTTGTGGATGGCATTCTGCTTAACCCTTTCAGCACAAACACAAAGATCACCTCTGGCTCCAAGTCAAAGATTCCAGAATCTTTTTCAGCTGGGGTTGGAGAATATGATGATCATCATCATCATCATGCTTTTCCAAGAGAAGATGGGTGCAACGTGTTGAAGAAAGGTGAGATTCTGAGGATGGACTTGGAGATAGGTTTGCCTAGAGGTTATGATTTGGATCTGGAGCTTCGTTTGGGTACTACTTACTCTTAG 738 0.4282 MKRNGFMKDYTSTQSCANNNKNHPTTKDHFSHVSNSYNNSNIINADYEEYVNGFPWPPRSYTCSFCRKEFKSAQALGGHMNVHRRDRARLRQQSPPTQAQAQGPLLNLNLNPNNNNSTSSSSTTTLKPLVTCTTLPLFVSPTTATPAPSAPSSHELNKRLIVVDGILLNPFSTNTKITSGSKSKIPESFSAGVGEYDDHHHHHAFPREDGCNVLKKGEILRMDLEIGLPRGYDLDLELRLGTTYS 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0524 245 MobiDBLite consensus disorder prediction 7 30 - -
Aed1g0524 245 MobiDBLite consensus disorder prediction 1 30 - -
Aed1g0524 245 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 88 IPR013087 -
Aed1g0524 245 PANTHER OS07G0101800 PROTEIN 13 245 - -
Aed1g0524 245 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Aed1g0524 245 SMART c2h2final6 61 83 IPR013087 -
Aed1g0524 245 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 13 245 - -
Aed1g0524 245 MobiDBLite consensus disorder prediction 92 124 - -
Aed1g0524 245 MobiDBLite consensus disorder prediction 88 124 - -
Aed1g0524 245 Pfam C2H2-type zinc finger 61 85 - -
Aed1g0524 245 SUPERFAMILY beta-beta-alpha zinc fingers 58 87 IPR036236 -
Aed1g0524 245 Gene3D Classic Zinc Finger 57 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0524 Aed-Chr1 6848790 6849527 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0524 36 241 C2H2 Transcription Factor Family AT3G23130 41.346 1.11e-30 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed1g0524 zf-C2H2_6 1.5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0524 - - gmx:100781722 271.552