Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0484 ATGGGGAAGTTATCGATTAAGTTGCACCGCAAGGAATCATCATCATGGCCATCATTGCAAATAACAAGGTGTTTTCATCACTGTGGTCGAAAATGCAATGCACAAGATGATGATCAAGGGAAGAATGTTAACTTCTCTAATCTCTTAATAGGGCAAAAATTTTCTCACGGTGCGCATAGTCAAATCTACCACGGTATATACAATAATGAACACGTAGCGGTTAAATCCGTAAAGCTATTTCGTGACGATGACGGCAATAATAACAATGCTCTCACTTCTCTTTTGGAGACACAATATTTAAGAGAAGTCACGCATCTGTCTCGTCTCCATCATCAAAACGTGGTCAAGTTCGTGGCCGCGTGGAAAAATCCACATTATTATTTGATTCTCACGGAGTATATGCAAAAGGGTTCATTGAGGGTGCATTTAAACAAGGTAGAGCACAAGCCAATTTCTATGAAAACCGTGACATCTTTTGCATTGGACATTGCACGTGGAATGGAGTATGTTCATTCACAAGGTATCATTCATAGAGACCTAAAACCGGAGAATGTTCTCGTTGATGAAGGGTTTCGTCTCAAAATTGCTGATTTTGGCACTTCTTGTGGGGCCGGAAAGTGTGACTCATTGAGGGGTACCTACCGTTGGATGGCACCAGAGATGATCAGAGGAAGCCGTCACGGGAGAAAGGTTGATGTGTACAGTTTTGGGCTTATTTTGTGGGAGCTTGTTAGTGGGTCATTGCCGTTTGAGGGTATGAGCCCAATACAAGTTGCGGTTGCGGTTAAGGATAGAAATGTGAGGCCCATTATACCTTCTGATTGCCCACATGTTTTGCGAGAATTGATCCAGCATTGTTGGGCCTACCGACCAGCGAAGAGGCCCGAGTTCTCTCTTGTTGTACAGGTCTTGGAGCAGTTTGATCAGTCTTTAAGTTTGCATAGATATTAA 951 0.429 MGKLSIKLHRKESSSWPSLQITRCFHHCGRKCNAQDDDQGKNVNFSNLLIGQKFSHGAHSQIYHGIYNNEHVAVKSVKLFRDDDGNNNNALTSLLETQYLREVTHLSRLHHQNVVKFVAAWKNPHYYLILTEYMQKGSLRVHLNKVEHKPISMKTVTSFALDIARGMEYVHSQGIIHRDLKPENVLVDEGFRLKIADFGTSCGAGKCDSLRGTYRWMAPEMIRGSRHGRKVDVYSFGLILWELVSGSLPFEGMSPIQVAVAVKDRNVRPIIPSDCPHVLRELIQHCWAYRPAKRPEFSLVVQVLEQFDQSLSLHRY 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0484 316 PIRSF ILK 28 316 - -
Aed1g0484 316 CDD STKc_MAP3K-like 56 304 - -
Aed1g0484 316 PRINTS Tyrosine kinase catalytic domain signature 231 253 IPR001245 GO:0004672|GO:0006468
Aed1g0484 316 PRINTS Tyrosine kinase catalytic domain signature 131 144 IPR001245 GO:0004672|GO:0006468
Aed1g0484 316 PRINTS Tyrosine kinase catalytic domain signature 212 222 IPR001245 GO:0004672|GO:0006468
Aed1g0484 316 PRINTS Tyrosine kinase catalytic domain signature 169 187 IPR001245 GO:0004672|GO:0006468
Aed1g0484 316 PRINTS Tyrosine kinase catalytic domain signature 275 297 IPR001245 GO:0004672|GO:0006468
Aed1g0484 316 Pfam Protein tyrosine and serine/threonine kinase 50 303 IPR001245 GO:0004672|GO:0006468
Aed1g0484 316 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 10 312 - -
Aed1g0484 316 SMART serkin_6 48 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g0484 316 ProSiteProfiles Protein kinase domain profile. 48 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g0484 316 Gene3D Transferase(Phosphotransferase) domain 1 136 314 - -
Aed1g0484 316 PANTHER TYROSINE KINASE FAMILY PROTEIN 10 312 - -
Aed1g0484 316 Gene3D Phosphorylase Kinase; domain 1 36 135 - -
Aed1g0484 316 SUPERFAMILY Protein kinase-like (PK-like) 41 304 IPR011009 -
Aed1g0484 316 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0484 Aed-Chr1 6539776 6540726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0484 1 315 MAP Kinase Kinase Kinase AT5G58950 50.938 1.38e-112 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Aed1g0484 PK_Tyr_Ser-Thr 3e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0484 - - gmx:100814245 431.795