Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0472 ATGGCCTTTGATGGATGTTGTCCTGACTGTAAACTTCCCGGGGACGATTGCCCGCTGATTTGGGGTGTATGCAATCATGCGTTTCATTTGCACTGTATCCTGAAATGGGTGAATTCTCAGACATCACAAGCTCATTGCCCCATGTGCCGTGGTGAATGGCAGTTTAAAGGATGA 174 0.477 MAFDGCCPDCKLPGDDCPLIWGVCNHAFHLHCILKWVNSQTSQAHCPMCRGEWQFKG 57
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0472 57 Pfam Anaphase-promoting complex subunit 11 RING-H2 finger 1 56 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Aed1g0472 57 SUPERFAMILY RING/U-box 2 56 - -
Aed1g0472 57 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 57 IPR013083 -
Aed1g0472 57 ProSiteProfiles Zinc finger RING-type profile. 7 50 IPR001841 -
Aed1g0472 57 CDD RING-H2_APC11 1 55 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Aed1g0472 57 PANTHER RING BOX 1 56 - -
Aed1g0472 57 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0472 Aed-Chr1 6469594 6470716 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0472 7 51 C3H Transcription Factor Family AT1G72220 40.426 9.14e-07 41.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0472 K03358 - gmx:100776546 138.658