Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0468 ATGAAGATTCAGTGTAACGTGTGTGAAGCTGCAGAGGCAAAGGTTCTGTGTTGTGCTGATGAGGCTGCGCTGTGTTGGCAGTGTGATGAGAAGGTTCATGCGGCTAACAAGCTTGCCAGCAAGCACCAGAGAGTGCCTCTTTTTACCTCTTCCTCTCATATGCCCAAATGTGACATTTGTCAGGAAGCATTAGGCTATTTTTTCTGTCTAGAGGATCGGGCTCTGCTCTGCAGAAAGTGTGATGTTGCAATACACACTGTAAATGCTTATGTCTCTGGTCATCAAAGATTTCTTCTCACTGGTGTAAGAGTAGGCCTTGAAGCTACAGACCCTGGTGCTTCCTCGACTTCTTTGAAGTCAGATTCTGGGGAGAAAGCCTCAGATACAAAGTCGTCTTCTGTCTCCAGAAAGGTTTCGACAGCGCCCCAGCCATCATCAGATTACACTGAAGTGCTACCGATCGAAGTTGGAGGAGTTGAGGAGTTTCCACCTGCTAAGGTGTCTTTTGGTGGCGGTTCTACAGCTGGAAATATCTCACAGTGGACGCTTGATGAATTCATTGGCTTGAATGAGTTCAGTCAAAATTATGATTACATGGAAGAATCATCAAGGGCTGATGGTGGTAAGCTCGGGGATTCCGATTCTCCTGTCTTAAGATCCGGTGAAGACGGAATGGAGGAGGACGATGACTATTTGGAATGTGTTTCAGGTTCATCATGGACGGTTCCTCAGATCCCTTCCCCACCTACGGCTTCCGGGTTATGCTGGCCAAAAGACCCTCAATATTCATCTGATAGTGCTCTGTTTGTTCCTGACATAAGCTTCTCTCACATGCAACAATCTCAGATTAGTAGTATTTTTTCGAGACGCCGGAGGCAGCTTTAA 885 0.4655 MKIQCNVCEAAEAKVLCCADEAALCWQCDEKVHAANKLASKHQRVPLFTSSSHMPKCDICQEALGYFFCLEDRALLCRKCDVAIHTVNAYVSGHQRFLLTGVRVGLEATDPGASSTSLKSDSGEKASDTKSSSVSRKVSTAPQPSSDYTEVLPIEVGGVEEFPPAKVSFGGGSTAGNISQWTLDEFIGLNEFSQNYDYMEESSRADGGKLGDSDSPVLRSGEDGMEEDDDYLECVSGSSWTVPQIPSPPTASGLCWPKDPQYSSDSALFVPDISFSHMQQSQISSIFSRRRRQL 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0468 294 SMART bboxneu5 4 47 IPR000315 GO:0008270
Aed1g0468 294 SMART bboxneu5 52 99 IPR000315 GO:0008270
Aed1g0468 294 MobiDBLite consensus disorder prediction 110 148 - -
Aed1g0468 294 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 292 - -
Aed1g0468 294 Gene3D Classic Zinc Finger 1 92 - -
Aed1g0468 294 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Aed1g0468 294 MobiDBLite consensus disorder prediction 110 147 - -
Aed1g0468 294 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Aed1g0468 294 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Aed1g0468 294 CDD Bbox1_BBX-like 5 47 - -
Aed1g0468 294 MobiDBLite consensus disorder prediction 202 229 - -
Aed1g0468 294 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 292 - -
Aed1g0468 294 CDD Bbox1_BBX-like 56 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0468 Aed-Chr1 6445025 6448298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0468 1 292 C2C2-CO-like Transcription Factor Family AT1G78600 48.624 2.44e-92 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aed1g0468 zf-B_box 5.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0468 - - gmx:100790959 505.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0468 1 6445025 6448298 Aed1g0468 1 6445025 6448298 ECH