LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed1g0466	ATGGTTGGATTCCAGAGTGACCATAAGCCTGGGAACAATTGCAATGGTAATTCTAATAGTTTTCCGGGTACGGATCGTCATGTTCGACTAATGAGAGGAAGAGAGCTAAGAAAAAGCAGCAAGGCACCTGTTTTGAATGAATCTCCTGATAGTAATAATATTAATGTGGATACTGAATATTTTGAGCATGACCTGCGCTTAAGTGAAGATAATAACTCTGCTACTCCCTTTGTTGAACGATACCTGGAAGGAGTGGCAGCAGCGGCAGCGCGGGGCGAAAGGGAAGATGGGAAACCTTTCAGACAACGACTTTTGGTGGTGGCCAATAGGCTGCCAGTCTCAGCCATTAGGAAAGGTGAGGATTCGTGGTCTTTGGAGATAAGTGCTGGTGGTCTGGTGAGCGCTCTCTTAGGTGTGAAGGAGTTTGAGGCGAGGTGGATAGGTTGGGCTGGTGTCAATGTGCCAGATGATATTGGACAAAAGGCACTTACAAAAGCTTTGGCTGAAAAGAGGTGTATCCCAGTATTTCTTGATGAAGAGATTGTTCATCAATATTACAATGGCTATTGCAACAACATTTTGTGGCCCCTTTTTCATTACCTTGGACTTCCACAAGAAGACCGCCTTGCTACCACACGTAGTTTCCAATCTCAGTTTGAAGCTTATCAGAAAGCAAATCAAATGTTTGCTGATGTTGTAAACCAACACTATGAAGAGGGTGATGTTGTTTGGTGCCATGATTACCATCTTATGTTTCTTCCACAATGCTTAAAGAATTATAACCATAAAATGAAAGTTGGCTGGTTTCTACATACCCCATTTCCATCTTCTGAAATTCACAGGACATTGCCATCTCGCTCAGAGCTCTTGCATGCTGTTCTTGCAGCTGATTTGGTTGGTTTTCACACCTACGACTATGCACGACATTTTGTTAGTGCATGTACACGCATTCTTGGACTTGAGGGCACGCCTGAAGGGGTTGAGAATCAAGGAAAGCTGACTCGAGTTGCAGCATTTCCAATAGGTATAGACTCAGAACGATTCATACGTGCACTTGACCTTCCTCAAGTCAAGGTTCACATCAAAGAATTACAAGAGAGATTTAAAGGAAGAAAGGTAATGTTAGGTGTTGATCGCCTTGATATGATTAAAGGAATCCCTCAAAAGATTCTAGCATTTGAAAAATTTTTGGAAGAGAATCGTGATTGGCGTGATAAAGTTGTTCTACTTCAAATTGCCGTGCCAACAAGAACAGATGTTCCTGAGTATCAAAAGCTTACAAGCCAGGTCCATGAAATTGTTGGTCGCATCAATGGCAGATTTGGAACACTGACTACTGTTCCCATACATCACCTGGATCGCTCTCTTGATTTTCATGCACTATGCGCTTTGTACGCTGTTACGGATGTAGCACTTGTCACGTCTTTGAGGGATGGAATGAATCTTGTAAGTTACGAATTTGTGGCCTGCCAAGATAAAAAGAAAGGGGTTCTCATTCTCAGTGAATTTGCTGGTGCTGCTCAGTCACTTGGTGCTGGGGCTATTCTGGTCAACCCTTGGAACATCACAGAAGTTGCTACTGCAATTGCCAAGGCTCTGAATATGCCATCGGCAGAACGAGAGAAGAGACATAAGCATAACTTTGACCATGTAAAAACTCACACTGCTCAGGAATGGGCAGAAACTTTTGTAAGTGAACTAAATGATACTGTTGTCGAGGCACAGATAAGGACAAAACAAGTTCCACCACGGCTTCCAACAGAGACTGCAGTTGAACGTTATTTGCAGTCAAATAATCGGTTGCTTATTTTGGGTTTCAATGGAACTTTAACTGAACCAGTTGAGAGAAAAGATGATCAGTTTAAAGAAAGGGAACTCACAGTGCATCCAGAACTAAAACAACCCTTGGAAGAACTTTGCAGTGACCCAAAGACCACAGTTGTTGTGCTTAGTGGCAGTGGTAGAGCAGTTCTAGATGAAAACTTCAAAGAATATGACATCTGGCTGGCAGCAGAGAATGGGATGTTTTTAAACCCTTCAAAGGGAGAATGGATGACAACAATGCCCGAGCAATTGAATATGGAATGGGTTGACAGCGTGAAGCATGTTTTTGATTACTTCACGGACAGAACACCTCGATCATATTTTGAAGAAAGGGAAGCTTCACTTGTATGGAGTTACAAACATTCAGATGTTGAGTTTGGAAGACTGCAAGCTAGGGACATGCTGCAGCATCTCTGGACAGGTCCAATTTCTAATGCATCTGTTGAAGTTGTTCAAGGGAGCCGATCTGTTGAGGTGCGAGCTGCTAATGTTACAAAGGGAGCAGCTATTGACCGCATTCTAGGTGAGATAGTTCACAGTAAATCCATGACAACACCAATTGATTACGTTCTGTGTATAGGACATTTTCTGACAAAGCAGGATGAAGATATATACGCCTTCTTTGAGCCAGAGCTACCTTCTATTGGTGTGGGTCTTCCACGAAGTAGTAGCAAGGTAACAACAGAAGGAGGCAAGTTTCATGCTGAGAAGATATCGTCACTGAAGATCCCAGCTAGTAAAAATAATGGAACAGCAACAAAGTCATCATCCCAAAACAAGGGACAACACCGGGCAGTGTCAAATTCCGAGAAGAAAACAAATAACAATCATGTGTGCCGTGCACCGCGTCGGCCGGCTCCGGAAAAGATCTCATGGAATGTCCTGGACCTGAAGAAGGAGAATTACTTCTCGTGCTCTGTTGGACGAACGCAGACGAATGCTCGGTATAGGCTTGGATCACCAGATGAAGTTGTTGCGTTTCTGAAGGAACTAGCGAATGCATGTCCATACTTTGTCTAA	2844	0.4321	MVGFQSDHKPGNNCNGNSNSFPGTDRHVRLMRGRELRKSSKAPVLNESPDSNNINVDTEYFEHDLRLSEDNNSATPFVERYLEGVAAAAARGEREDGKPFRQRLLVVANRLPVSAIRKGEDSWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDDIGQKALTKALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFEAYQKANQMFADVVNQHYEEGDVVWCHDYHLMFLPQCLKNYNHKMKVGWFLHTPFPSSEIHRTLPSRSELLHAVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVENQGKLTRVAAFPIGIDSERFIRALDLPQVKVHIKELQERFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEENRDWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTTVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDKKKGVLILSEFAGAAQSLGAGAILVNPWNITEVATAIAKALNMPSAEREKRHKHNFDHVKTHTAQEWAETFVSELNDTVVEAQIRTKQVPPRLPTETAVERYLQSNNRLLILGFNGTLTEPVERKDDQFKERELTVHPELKQPLEELCSDPKTTVVVLSGSGRAVLDENFKEYDIWLAAENGMFLNPSKGEWMTTMPEQLNMEWVDSVKHVFDYFTDRTPRSYFEEREASLVWSYKHSDVEFGRLQARDMLQHLWTGPISNASVEVVQGSRSVEVRAANVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLTKQDEDIYAFFEPELPSIGVGLPRSSSKVTTEGGKFHAEKISSLKIPASKNNGTATKSSSQNKGQHRAVSNSEKKTNNNHVCRAPRRPAPEKISWNVLDLKKENYFSCSVGRTQTNARYRLGSPDEVVAFLKELANACPYFV	947

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed1g0466	947	MobiDBLite	consensus disorder prediction	1	25	-	-
	Aed1g0466	947	MobiDBLite	consensus disorder prediction	8	24	-	-
	Aed1g0466	947	MobiDBLite	consensus disorder prediction	852	883	-	-
	Aed1g0466	947	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	33	940	-	-
	Aed1g0466	947	CDD	GT20_TPS	103	568	IPR001830	GO:0003824\|GO:0005992
	Aed1g0466	947	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	33	940	IPR001830	GO:0003824\|GO:0005992
	Aed1g0466	947	Gene3D	Glycogen Phosphorylase B;	350	553	-	-
	Aed1g0466	947	TIGRFAM	trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming)	103	568	IPR012766	GO:0003825\|GO:0005992
	Aed1g0466	947	CDD	HAD_TPP	601	833	-	-
	Aed1g0466	947	SUPERFAMILY	UDP-Glycosyltransferase/glycogen phosphorylase	102	571	-	-
	Aed1g0466	947	MobiDBLite	consensus disorder prediction	852	891	-	-
	Aed1g0466	947	MobiDBLite	consensus disorder prediction	36	55	-	-
	Aed1g0466	947	Pfam	Glycosyltransferase family 20	103	568	IPR001830	GO:0003824\|GO:0005992
	Aed1g0466	947	TIGRFAM	T6PP: trehalose-phosphatase	599	814	IPR003337	GO:0003824\|GO:0005992
	Aed1g0466	947	Gene3D	-	690	770	-	-
	Aed1g0466	947	Gene3D	-	603	833	IPR023214	-
	Aed1g0466	947	Gene3D	Glycogen Phosphorylase B;	95	349	-	-
	Aed1g0466	947	Pfam	Trehalose-phosphatase	606	826	IPR003337	GO:0003824\|GO:0005992
	Aed1g0466	947	SUPERFAMILY	HAD-like	600	940	IPR036412	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed1g0466	Aed-Chr1	6393499	6413453	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed1g0466	10	941	Trehalose Biosynthesis Gene Families	AT1G78580	76.377	0.0	1456

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed1g0466	K16055		-	gmx:100789554	1719.52

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed1g0466	1	6393499	6413453	Aed4g1210	4	12038397	12055809	ECH
	Aed1g0466	1	6393499	6413453	Aed1g0466	1	6393499	6413453	ECH