Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0438 ATGCGATTTGCAGGTTACATAGCGCAATGGAGAAGCGCAGCGAAGGAAACGTTGGATCGCACAGCAATCACTGTGAAATTCCTCTGCTGGCTTCACTTCACCGCGAACTACCTCTGTTCCCCATGCCACGCCTATGGGGTTAGCATGCTCCCCACCCTCAACGTCGCCGGCGACGTCCTTCTCGCCGACCACCTCTCGCCGCGCGTCGGGAACGTCGGCCACGGCGACCTGGTGCTGGTCCGGTCACCTCTCAACCCTAATATCAGGCTGACGAAGCGCGTCGTTGCCGTGGAAGGGGACACTGTTACTTACTTCGACCCTTTGCACTCTGAGGATGCTCAAGTTGCAGTGGTGCCAAAGGGACATGTTTGGATTCAAGGGGATAACATTTATGCTTCCCGTGATTCACGGCATTTTGGTCCTGTTCCATATGGTCTTATACAAGGAAAAGTGTTTTTCCGGGTATGGCCACCTGATAGCTTTGGACCGCTAGGCCAATGA 501 0.5469 MRFAGYIAQWRSAAKETLDRTAITVKFLCWLHFTANYLCSPCHAYGVSMLPTLNVAGDVLLADHLSPRVGNVGHGDLVLVRSPLNPNIRLTKRVVAVEGDTVTYFDPLHSEDAQVAVVPKGHVWIQGDNIYASRDSRHFGPVPYGLIQGKVFFRVWPPDSFGPLGQ 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0438 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 118 137 IPR000223 GO:0006508|GO:0008236|GO:0016020
Aed1g0438 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 37 53 IPR000223 GO:0006508|GO:0008236|GO:0016020
Aed1g0438 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 90 102 IPR000223 GO:0006508|GO:0008236|GO:0016020
Aed1g0438 166 Pfam Signal peptidase, peptidase S26 113 156 IPR019533 GO:0004252|GO:0006465
Aed1g0438 166 Pfam Signal peptidase, peptidase S26 24 104 IPR019533 GO:0004252|GO:0006465
Aed1g0438 166 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 8 162 - -
Aed1g0438 166 Gene3D Umud Fragment, subunit A 35 162 - -
Aed1g0438 166 CDD S26_SPase_I 46 151 IPR019533 GO:0004252|GO:0006465
Aed1g0438 166 SUPERFAMILY LexA/Signal peptidase 37 164 IPR036286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0438 Aed-Chr1 6083427 6087350 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0438 49 165 MADS-box Gene Family AT1G29960 54.237 4.90e-41 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0438 K09647 - gmx:100527597 238.039