Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0368 ATGAGCAACATAAGCATGGTGGAGGCAAAGCTGCCACCAGGGTTCAGATTTCATCCAAGAGATGAAGAACTTGTGTGTGATTACTTGATGAAGAAGGTTTCACTCAATGATTCTCTTCTTATGATAGACGTTGACCTTAACAAGTGTGAGCCTTGGGATATTCCTGTGTGCATGATGAGGGGTAAAAATTCATTGTGTGGGGTGAGGTATATGATAGCAACTGCAATGGCTAGTATAGATCCCAATCTATACATGCACGAAGATTGGGTTTTGTGTAGGGTGTTCTACAAAAACAGAGAAGTTTCAGCCAAACCTAGCATGGGTAGCAGCTGCTATGATGACACAGGATCTTCATCTCTCCCTGCATTAATGGACTCTTACATAAGCTTTGACCAAACTCATCATCAAACCCATAATAATAATAATGCAGATGATCAGTTTGAGCAAGTGCCCTGCTTCTCCATTTTCTCTCATCAGAACCAAACAAACCCTATTTTGAACAACATGGCCACCACTATGGAGACTAAGTTACCATCTTCTGCCATCAACCATGCAGTAAGTGCATATGGAGGAGTAGCACCAAATTTGGGTTATTGCTTAGACCCTTCTTTAACTTGTGACAGAAAAATGTTGAAAGCTGTTTTGAGTCAGATCACAAAGATGGAAAGGATTAATCCACTTATTAACCAAAGTTTAATAAAAGGGTCACCAAGCTTAGGTGAAGGAAGTTCAGCAGAGAGTTATTTATCTGAAGTGGGAATGCCCCACATGTGGAACAATTACTGA 786 0.4059 MSNISMVEAKLPPGFRFHPRDEELVCDYLMKKVSLNDSLLMIDVDLNKCEPWDIPVCMMRGKNSLCGVRYMIATAMASIDPNLYMHEDWVLCRVFYKNREVSAKPSMGSSCYDDTGSSSLPALMDSYISFDQTHHQTHNNNNADDQFEQVPCFSIFSHQNQTNPILNNMATTMETKLPSSAINHAVSAYGGVAPNLGYCLDPSLTCDRKMLKAVLSQITKMERINPLINQSLIKGSPSLGEGSSAESYLSEVGMPHMWNNY 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0368 261 PANTHER OS08G0200600 PROTEIN 1 57 - -
Aed1g0368 261 PANTHER OS08G0200600 PROTEIN 81 167 - -
Aed1g0368 261 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 57 - -
Aed1g0368 261 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 81 167 - -
Aed1g0368 261 Pfam No apical meristem (NAM) protein 12 60 IPR003441 GO:0003677|GO:0006355
Aed1g0368 261 SUPERFAMILY NAC domain 2 98 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0368 Aed-Chr1 5423920 5428611 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0368 2 259 NAC Transcription Factor Family AT1G56010 37.920 1.10e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aed1g0368 NAM 1.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0368 - - gmx:100301890 246.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0368 1 5423920 5428611 Aed1g0368 1 5423920 5428611 ECH