LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed1g0340	ATGGTGAAGTTCACAGTTGACAAAGTCCGGCGGATTATGGACCGCAGGCACAACATTAGGAACATGTCTGTTATTGCTCATGTTGATCACGGGAAATCCACACTGACAGATTCTCTTGTGGCTGTTGCTGGTATCATAGCAGAAGAGAGTGCAGGAGATGTGAGGCTGACAGATACCCATCAAGACGAAGCTGAATGTGGAATCACTATCAAGTCCACCGGCATCTCTCTCTACTATGAGATGCAAGAGCCGGGGCATGTGGACTTCTCATCCGAGGTCACTGCTGCGCTCCGCATCACCGATGGAACACTTGTGGTGGTGGATTGTGTTGAGGGTGTCTGTGTCCAAACAGAAACTGTGCTGAGACAGGCTCTTGGAGAAAGGGTTAAGCCCGTTTTGGTAGTGAACAAGATGGATAGGTGCTTCCTTGAGCTCCACCTTGATGCAGAGGATGCATACCTTACATTTCAAAGGGTTGTGAATGTGATCATGGCAACTTATGAAGATGCAGCACTTGGTGATATTCAGTATAAACTTGAAATCAGAAATGGTACCTCCATATGCAACAATGTCAACCTCCAGGGAAGCCAGCAATGCCACATGGAAAAGCCAGTAGATCAATGA	624	0.4728	MVKFTVDKVRRIMDRRHNIRNMSVIAHVDHGKSTLTDSLVAVAGIIAEESAGDVRLTDTHQDEAECGITIKSTGISLYYEMQEPGHVDFSSEVTAALRITDGTLVVVDCVEGVCVQTETVLRQALGERVKPVLVVNKMDRCFLELHLDAEDAYLTFQRVVNVIMATYEDAALGDIQYKLEIRNGTSICNNVNLQGSQQCHMEKPVDQ	207

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed1g0340	207	TIGRFAM	small_GTP: small GTP-binding protein domain	19	155	IPR005225	GO:0005525
	Aed1g0340	207	Pfam	Elongation factor Tu GTP binding domain	17	168	IPR000795	GO:0003924\|GO:0005525
	Aed1g0340	207	Gene3D	-	3	198	IPR027417	-
	Aed1g0340	207	PANTHER	TRANSLATION ELONGATION FACTOR EF-2 SUBUNIT	83	180	-	-
	Aed1g0340	207	ProSiteProfiles	Translational (tr)-type guanine nucleotide-binding (G) domain profile.	17	207	IPR000795	GO:0003924\|GO:0005525
	Aed1g0340	207	PANTHER	TRANSLATION ELONGATION FACTOR EF-2 SUBUNIT	1	82	-	-
	Aed1g0340	207	PANTHER	TRANSLATION ELONGATION FACTOR-RELATED	83	180	-	-
	Aed1g0340	207	PANTHER	TRANSLATION ELONGATION FACTOR-RELATED	1	82	-	-
	Aed1g0340	207	PRINTS	GTP-binding elongation factor signature	95	106	IPR000795	GO:0003924\|GO:0005525
	Aed1g0340	207	PRINTS	GTP-binding elongation factor signature	79	89	IPR000795	GO:0003924\|GO:0005525
	Aed1g0340	207	PRINTS	GTP-binding elongation factor signature	131	140	IPR000795	GO:0003924\|GO:0005525
	Aed1g0340	207	PRINTS	GTP-binding elongation factor signature	21	34	IPR000795	GO:0003924\|GO:0005525
	Aed1g0340	207	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	4	180	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed1g0340	Aed-Chr1	5180636	5187335	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed1g0340	1	176	Eukaryotic Initiation Factors Gene Family	AT1G56070	73.134	1.72e-94	291

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed1g0340	K03234		-	smo:SELMODRAFT_411087	283.878