Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0339 ATGGTGGTAGGTACCTGCAGGGGCATACAGTACCTCAATGAAATCAAAGACTCGGTTGTTTCTGGGTTGTTTGAGGGAGCATCTTATGCAGGTCCAATGGCTGATGAGAACATGAGAGGGGTCTGCTTTGAGATTTGTGATGTGGTTCTTCATGCTGATGCCATTCATAGAGGAGTTGGCCAGATCATTTCAACTGCAAGAAGAGCCTGCTATGCAGCCATGCTGACAGCAAAACCAAGACTTCTCAAGCCTGTCTATCTAGTGGAAATACAGGCACCTGAACAGGCTCTTGGTGGGATATACAGTGTTCTTAACCAGAAAAAAGGGCATGTGTTTGAGGAAATCCAAAGGCCTGGCTCCCCACTTTACAATGTCAAGGCATATTTGCTTGTTATTGAGTCATTTAAATTCAATGAATGA 420 0.4452 MVVGTCRGIQYLNEIKDSVVSGLFEGASYAGPMADENMRGVCFEICDVVLHADAIHRGVGQIISTARRACYAAMLTAKPRLLKPVYLVEIQAPEQALGGIYSVLNQKKGHVFEEIQRPGSPLYNVKAYLLVIESFKFNE 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0339 139 SUPERFAMILY Ribosomal protein S5 domain 2-like 3 82 IPR020568 -
Aed1g0339 139 Gene3D - 76 139 - -
Aed1g0339 139 CDD aeEF2_snRNP_like_IV 7 87 - -
Aed1g0339 139 Pfam Elongation factor G C-terminus 81 138 IPR000640 -
Aed1g0339 139 PANTHER - 1 138 - -
Aed1g0339 139 Gene3D - 1 75 IPR014721 -
Aed1g0339 139 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 1 138 - -
Aed1g0339 139 CDD eEF2_snRNP_like_C 84 139 - -
Aed1g0339 139 Pfam Elongation factor G, domain IV 3 78 IPR005517 GO:0005525
Aed1g0339 139 SUPERFAMILY EF-G C-terminal domain-like 84 138 IPR035647 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0339 Aed-Chr1 5171105 5171704 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0339 1 138 Eukaryotic Initiation Factors Gene Family AT1G56070 75.362 9.57e-72 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0339 K03234 - gmx:100787816 236.113