Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0338 ATGTCTGTTATTGCTCATGTTGATCACGGGAAATCCACACTGACAGATTCTCTTGTGGCTGTTGCTGGTATCATAGCAGAAGAGAGTGCAGGAGATGTGAGGCTGACAGATACCTGTCAAGACGAAGCTGAGCGTGGAATCACTATCAAGTTCACCGGCATCTCTCTCTATTATGAGATGCAAGAGGTTGACTTGAAGAATTTCAAGGGAGAGCGTGAAGGGAATGAGTTCCTTATAAACCTCATTGACTCACCGAGGCATGTGGACTTCTCATCCGAGGTCACTGCTGCGCTCCGCATCACCCATGGAGCACTTGTGGTGGTGGATTGTGTTGAGGGTGTCTGTGTCCAAACAGAAACTGTGCTGAGACAGGCTCTTGGAGAAAGGGTTAAGCCCGTTTTGGTTGTGAACAAGATGGATAGGTGCTTCCTTGAGCTCCACCTTGATGCTGAGGATGCATACCTTACATTTCAAAGGGTTGTTGAGAGTGTGAATGTGATCATGGCAACTTATGAAGATGCAGCACTTGGTGATATTCAGGTATACCCTGAAAAAGGCACGGTTGCTTTCTCTGCTGGCTTGCATGGATGGGGTTTTACACTCACCAACTTTGCAAAAATGTTTGCTTCCAAGTTGGGAGTTGATGAGGCAAAGATGATGAGTAGGCTTTGGGGTGAGAATTTCTTTGACTCTGCTACCAAAAATTGGACCAACAAGCACACCAGGACTTCTACTTGCAAGCGTGTCTTTGTTATGTTCTGTTATGAACCAATCAAACAAATTATTGAACTTTGCATGCGGGACCAAAGGGATGTGCTGTGGCCGAGGTTGGAAAAGCTTGGGGTGAACTTCAAGTCAGAGGAAAAGGAGTTGACAGGAAAGGCTTTGATGAAGCATGTTATGCAGAGCTGGCTTCCGGCAAGTAGAGCGCTTCTGGAAATGATGATATATCACCTTCCCTCTCCATCCAGTGCACAGCAATATCGTGTGGAGAATTTGTCAGAATCATGGGACCAAACTATGTCCCTGGGGAGAAAAAGGACTTGTATGTTAAGTGTTCAGCGCACTGTAATTTGGATGGGAAAGAAACAGGAAACTATTGAAGACGTGCCTTGTGGCAACACAGTAGCCTTGGTGGGTTTGGACCAGTTCATCACCAAGAATGCTACATTGACAAATGAGAAGGAAGTTGATGCACACCCTATTCGAGCTATGAAGTTTTCTGTGTCACCAGTGGACTTGCAGGATGATTTCATGAATGGAGCAGAGGTTTCAATATCTGATCCCATTGTCTCTTTCCGTGAGACTGTGTTAGAGAGGTCTTGCCATACAGTGATGAGCAAGTCACCTAACAGACACAACCGTCTGTACATGGAGGCTGGACTTGCCGAGGCTATTGATGATGGAAAGATTTGA 1416 0.4583 MSVIAHVDHGKSTLTDSLVAVAGIIAEESAGDVRLTDTCQDEAERGITIKFTGISLYYEMQEVDLKNFKGEREGNEFLINLIDSPRHVDFSSEVTAALRITHGALVVVDCVEGVCVQTETVLRQALGERVKPVLVVNKMDRCFLELHLDAEDAYLTFQRVVESVNVIMATYEDAALGDIQVYPEKGTVAFSAGLHGWGFTLTNFAKMFASKLGVDEAKMMSRLWGENFFDSATKNWTNKHTRTSTCKRVFVMFCYEPIKQIIELCMRDQRDVLWPRLEKLGVNFKSEEKELTGKALMKHVMQSWLPASRALLEMMIYHLPSPSSAQQYRVENLSESWDQTMSLGRKRTCMLSVQRTVIWMGKKQETIEDVPCGNTVALVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVDLQDDFMNGAEVSISDPIVSFRETVLERSCHTVMSKSPNRHNRLYMEAGLAEAIDDGKI 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0338 471 Pfam Elongation factor Tu GTP binding domain 1 321 IPR000795 GO:0003924|GO:0005525
Aed1g0338 471 SUPERFAMILY Translation proteins 346 400 IPR009000 -
Aed1g0338 471 Gene3D - 1 216 IPR027417 -
Aed1g0338 471 PANTHER TRANSLATION ELONGATION FACTOR EF-2 SUBUNIT 348 412 - -
Aed1g0338 471 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 413 471 - -
Aed1g0338 471 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 348 412 - -
Aed1g0338 471 PANTHER TRANSLATION ELONGATION FACTOR EF-2 SUBUNIT 413 471 - -
Aed1g0338 471 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 320 IPR027417 -
Aed1g0338 471 TIGRFAM small_GTP: small GTP-binding protein domain 3 144 IPR005225 GO:0005525
Aed1g0338 471 Gene3D Translation factors 321 408 - -
Aed1g0338 471 PANTHER TRANSLATION ELONGATION FACTOR EF-2 SUBUNIT 1 336 - -
Aed1g0338 471 CDD EF2 1 209 - -
Aed1g0338 471 SUPERFAMILY Ribosomal protein S5 domain 2-like 431 470 IPR020568 -
Aed1g0338 471 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 1 336 - -
Aed1g0338 471 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 1 323 IPR000795 GO:0003924|GO:0005525
Aed1g0338 471 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 37 52 IPR031157 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0338 Aed-Chr1 5163997 5170993 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0338 1 471 Eukaryotic Initiation Factors Gene Family AT1G56070 61.775 0.0 690
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0338 K03234 - tcc:18594569 684.871