Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0336 ATGGTGAAGTTCACAGTTGACAAAGTCCGGCGGATTATGGACCGCAGGCACAACATTAGGAACATGTCTGTTATTGCTCATGTTGACCACGGGAAATCCACACTGACAGATTCTCTTGTGGCTGTTGCTGGTATCATAGCAGAAGAGAGTGCAGGAGATGTGAGGCTGACAGATACCCATCAAGACGAAGCTGAATGTGGAATCACTATCAAGTCCACCGGCATCTCTCTCTACTATGAGATGCAAGAGGTTGACTTGAAGAATTTCAAGGGAGAGCGTGAAGGGAATGAGTTCCTTATGAACCTCATTGACTCGCTGGGGCATGTGGACTTCTCATCCGAGGTCACTGCTGCGCTCCGCATCACCGATGGAACACTTGTGGTGGTGGATTGTGTGGAGGGTGTCTGTGTCCAAACAGAAACTGTGCTGAGACAGGCTCTTGGAGAAAGGGTTAAGCCCGTTTTGGTGGTGAACAAGATGGATAGGTGCTTCCTTGAGCTCCACCTTGATGCAGAGGATGCATACCTTACATTTCAAAGGGTTGTGAATGTGATCATGGCAACTTATGAAGATGCAGCACTTGGTGATATTCAGGTATACCCTGAAAAAGGCACGGTTGCTTTCTCCGCTGGCTTGCATGGATGGAGTTTTACACTCACCAACTTTGCAAAAATGTATGCTTCCAAGTTTGGAGTTGATGAGGCAAAGATGATGAGTAGGCTTTGGGGTGAGAATTTCTTTGACTCTGCTACCAAAAAGTGGACCAACAAGCACACCAGGACTTCTACTTGCAAGTGCGGCTTTGTTATGTTCTGTTATGAACCAATCAAACAAATTATTGAACTTTGCATGCGGGACCAAAGGGATGTGCTGTGGCCGAGGTTGGAAAAGCTTGGGGTGAACTTGAAGTCAGGAAAAGGAGTTGACAGGAAAGGCTTTGATGAAGCATGTTATGCAGAGCTGGCTTCCGGCAAGTAG 978 0.4703 MVKFTVDKVRRIMDRRHNIRNMSVIAHVDHGKSTLTDSLVAVAGIIAEESAGDVRLTDTHQDEAECGITIKSTGISLYYEMQEVDLKNFKGEREGNEFLMNLIDSLGHVDFSSEVTAALRITDGTLVVVDCVEGVCVQTETVLRQALGERVKPVLVVNKMDRCFLELHLDAEDAYLTFQRVVNVIMATYEDAALGDIQVYPEKGTVAFSAGLHGWSFTLTNFAKMYASKFGVDEAKMMSRLWGENFFDSATKKWTNKHTRTSTCKCGFVMFCYEPIKQIIELCMRDQRDVLWPRLEKLGVNLKSGKGVDRKGFDEACYAELASGK 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0336 325 TIGRFAM small_GTP: small GTP-binding protein domain 19 174 IPR005225 GO:0005525
Aed1g0336 325 Gene3D - 3 234 IPR027417 -
Aed1g0336 325 Pfam Elongation factor Tu GTP binding domain 17 218 IPR000795 GO:0003924|GO:0005525
Aed1g0336 325 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 17 251 IPR000795 GO:0003924|GO:0005525
Aed1g0336 325 CDD EF2 20 227 - -
Aed1g0336 325 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 1 305 - -
Aed1g0336 325 PANTHER TRANSLATION ELONGATION FACTOR EF-2 SUBUNIT 1 305 - -
Aed1g0336 325 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 305 IPR027417 -
Aed1g0336 325 PRINTS GTP-binding elongation factor signature 101 111 IPR000795 GO:0003924|GO:0005525
Aed1g0336 325 PRINTS GTP-binding elongation factor signature 21 34 IPR000795 GO:0003924|GO:0005525
Aed1g0336 325 PRINTS GTP-binding elongation factor signature 65 73 IPR000795 GO:0003924|GO:0005525
Aed1g0336 325 PRINTS GTP-binding elongation factor signature 153 162 IPR000795 GO:0003924|GO:0005525
Aed1g0336 325 PRINTS GTP-binding elongation factor signature 117 128 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0336 Aed-Chr1 5152066 5160029 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0336 1 304 Eukaryotic Initiation Factors Gene Family AT1G56070 78.827 9.10e-178 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0336 K03234 - sind:105176517 508.834