Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0335 ATGTCTCTGCTTTTGGTGTGGCTTTGTCTGGTGAAGTTTACAGCTGAAGAGCTTCGTCGCATTATGGACTACAAGCATAATATTCGGAATATGTCTGTCATCGCTCATGTTGATCACGGAAAATCAACCCTCACTGATTCCCTTGTGGCTGCTGCTGGTATTATAGCACAAGAAGTGGCTGGTGATGTTCGAATGACTGATACCCGTGCGGATGAAGCTGAGCGTGGTATTACAATCAAGTCCACGGGTATCTCACTCTACTATGAAATGACTGATGAAGCTCTCAAGAGTTTCAAGGGAGAACGCAATGGGAATGAGTATCTTATCAATCTTATTGACTCCCCTGGACATGTTGACTTCTCATCTGAGGTTACTGCTGCACTCCGTATTACTGATGGAGCTCTAGTCGTGGTTGATTGTGTTGAAGGAGTCTGTGTGCAAACAGAAACTGTGCTACGACAAGCCCTGGGAGAAAGGATTAGGCCTGTTCTTACTGTTAACAAGATGGACAGGTGCTTCCTTGAGCTCCAGGTTGATGGAGAGGAGGCTTACCAGACATTTCAGAGGGTTATTGAGAATGCTAATGTGATCATGGCCACATACGAAGATCCACTTCTTGGTGATGTTCAGGTCTATCCTGAGAAAGGAACAGTTGCTTTTTCTGCTGGTCTGCATGGCTGGGCTTTTACCCTGACCAACTTTGCCAAGATGTATGCATCCAAGTTTGGAGTTGATGAATCAAAGATGATGGAAAGGCTCTGGGGTGAAAACTTCTTTGATCCCGCCACCAAGAAATGGACCAGCAAGAATTCTGGTACTGCTACATGCAAGCGTGGGTTTGTTCAGTTCTGTTATGAGCCCATCAAGCAGATAATCAACACATGCATGAATGATCAGAAGGATAAGCTGTGGCCTATGCTCCAAAAGCTTGGGGTCACAATGAAATCCGATGAAAAGGACCTCATGGGTAAAGCTTTGATGAAGCGTGTCATGCAAACCTGGCTTCCAGCAAGTAGTGCACTATTGGAAATGATGATATTTCATCTCCCCTCTCCCTCAACAGCCCAGAGGTATCGTGTGGAGAATTTGTATGAGGGTCCCCTTGATGATCAATATGCTACTGCTATCAGAAACTGTGACCCCGATGGACCTCTGATGCTCTATGTCTCTAAGATGATTCCTGCATCTGACAAGGGAAGATTTTTTGCTTTTGGTCGTGTGTTTGCCGGCAAGGTTTCAACTGGTTTGAAGGTGAGGATCATGGGACCAAACTTTGTCCCTGGGGAGAAGAAGGATTTGTACACTAAGAGTGTTCAAAGAACTGTCATTTGGATGGGTAAGAAACAGGAAACTGTTGAGGATGTTCCTTGTGGTAACACAGTGGCTTTGGTCGGTTTGGACCAATACATCACAAAGAATGCTACATTGACAAATGAGAAGGAAGTTGATGCCCACCCTATTAGAGCCATGAAGTTTTCTGTCTCACCTGTTGTGCGGGTTGCTGTTCAATGTAAGGTTGCATCTGATCTTCCCAAGCTTGTTGAAGGTCTTAAGAGATTGGCCAAGTCAGATCCTATGGTTGTTTGTACCATTGAGGAGTCTGGTGAACACATTGTTGCTGGTGCAGGAGAGCTTCATCTTGAGATCTGTTTGAAGGACTTGCAGGATGATTTCATGGGTGGAGCTGAGATCATCAAATCTGACCCAGTTGTCTCATTCAGGGAAACTGTCCTTGAGAGATCAGTCCGCACTGTGATGAGCAAATCACCCAACAAGCACAATCGTCTGTACATGGAAGCAAGGCCATTGGAGGAGGGTCTCGCAGAGGCCATCGATGATGGAAAGATTGGACCAAGAGATGACCCCAAGGTCCGCTCCAAGATCCTCTCTGAAGAGTTCGGCTGGGACAAGGATCTTGCCAAGAAAATCTGGTGCTTTGGCCCCGAAACCCTTGGACCCAACATGGTGGTTGATATGTGTAAGGGAGTCCAGTACTTGAATGAAATCAAGGATTCCGTGGTTGCTGGATTCCAGTGGGCCTCAAAAGAAGGTGCCTTGGCTGAAGAGAACATGAGAGCTATCTGCTTTGAAGTGTGCGATGTTGTCCTCCACGCTGACGCCATCCACAGAGGTGGTGGACAGATCATTCCCACTGCCAGGAGAGTCTTCTATGCTTCCCAGATCACTGCCAAACCCAGGCTCCTTGAGCCCGTCTACCTCGTTGAAATCCAGGCACCCGAGCAAGCTCTTGGTGGAATCTACAGTGTTCTTAATCAGAAACGTGGACACGTCTTTGAGGAAATGCAGAGGCCAGGTACACCACTCTACAACATCAAAGCATACCTCCCTGTCATTGAGTCATTTGGTTTCTCAAGCACATTGAGGGCTGCAACATCAGGCCAAGCCTTCCCACAGTGTGTGTTTGATCACTGGGACATGATGTCATCTGACCCATTGGAGGCTGGTTCACAAGCTGCAACTCTTGTCACTGACATTCGCAAGAGGAAGGGCTTGAAGGAACAGATGACTCCTCTCTCCGAGTTTGAAGACAAGCTTTAA 2559 0.4689 MSLLLVWLCLVKFTAEELRRIMDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDEALKSFKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTSKNSGTATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSDEKDLMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQRYRVENLYEGPLDDQYATAIRNCDPDGPLMLYVSKMIPASDKGRFFAFGRVFAGKVSTGLKVRIMGPNFVPGEKKDLYTKSVQRTVIWMGKKQETVEDVPCGNTVALVGLDQYITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLERSVRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGKIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETLGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRAICFEVCDVVLHADAIHRGGGQIIPTARRVFYASQITAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEAGSQAATLVTDIRKRKGLKEQMTPLSEFEDKL 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0335 852 TIGRFAM small_GTP: small GTP-binding protein domain 29 185 IPR005225 GO:0005525
Aed1g0335 852 CDD eEF2_snRNP_like_C 736 814 - -
Aed1g0335 852 CDD EF2 29 239 - -
Aed1g0335 852 Gene3D - 579 731 IPR014721 -
Aed1g0335 852 CDD aeEF2_snRNP_like_IV 568 740 - -
Aed1g0335 852 CDD EF2_II 384 479 - -
Aed1g0335 852 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 26 353 IPR000795 GO:0003924|GO:0005525
Aed1g0335 852 Pfam Elongation Factor G, domain III 496 558 IPR041095 -
Aed1g0335 852 Gene3D - 732 852 - -
Aed1g0335 852 SUPERFAMILY EF-G C-terminal domain-like 736 847 IPR035647 -
Aed1g0335 852 SUPERFAMILY Translation proteins 351 485 IPR009000 -
Aed1g0335 852 SMART EFG_C_a 733 822 IPR000640 -
Aed1g0335 852 PANTHER - 10 851 - -
Aed1g0335 852 Pfam Elongation factor G, domain IV 619 730 IPR005517 GO:0005525
Aed1g0335 852 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 10 851 - -
Aed1g0335 852 SUPERFAMILY Ribosomal protein S5 domain 2-like 571 735 IPR020568 -
Aed1g0335 852 Pfam Elongation factor Tu GTP binding domain 26 351 IPR000795 GO:0003924|GO:0005525
Aed1g0335 852 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 67 82 IPR031157 -
Aed1g0335 852 SUPERFAMILY EF-G C-terminal domain-like 493 569 IPR035647 -
Aed1g0335 852 Gene3D - 12 246 IPR027417 -
Aed1g0335 852 PRINTS GTP-binding elongation factor signature 74 82 IPR000795 GO:0003924|GO:0005525
Aed1g0335 852 PRINTS GTP-binding elongation factor signature 126 137 IPR000795 GO:0003924|GO:0005525
Aed1g0335 852 PRINTS GTP-binding elongation factor signature 162 171 IPR000795 GO:0003924|GO:0005525
Aed1g0335 852 PRINTS GTP-binding elongation factor signature 110 120 IPR000795 GO:0003924|GO:0005525
Aed1g0335 852 PRINTS GTP-binding elongation factor signature 30 43 IPR000795 GO:0003924|GO:0005525
Aed1g0335 852 Gene3D Elongation Factor G (Translational Gtpase), domain 3 495 572 - -
Aed1g0335 852 Pfam Elongation factor G C-terminus 733 820 IPR000640 -
Aed1g0335 852 Pfam Elongation factor Tu domain 2 403 476 IPR004161 GO:0005525
Aed1g0335 852 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 350 IPR027417 -
Aed1g0335 852 CDD EF2_snRNP_III 496 568 - -
Aed1g0335 852 Gene3D Translation factors 352 493 - -
Aed1g0335 852 SMART EFG_IV_2 614 731 IPR005517 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0335 Aed-Chr1 5146506 5150449 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0335 10 852 Eukaryotic Initiation Factors Gene Family AT1G56070 93.238 0.0 1660