Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0311 ATGGGGAAAGGAAGAGCACCATGCTGTGACAAGACTCAAGTGAAGAGAGGGCTTCTTCGATGTGGGAAAAGTTGTCGTTTGAGATGGATCAATTATCTCAGGCCTGATGTGAAGAGAGGCAATTTTACACCAGAGGAAGAGGAAACCATAATAAAGCTACACAAGGCCTTAGGAAACAAGTGGTCAAAGATTGCAGCAGGTTTGCCTGGTAGAACTGACAATGAGATCAAGAATGTGTGGAACACACACTTGAAGAAAAGATTGTCTCCCAAGAAAGGTTCAGACTCAAGTGCAGATGAATCCAAGCCAGAATCATCAATAACATCCTCCTCTTCCTCATCATCTGAGTCATTTTTCTCCAATGAGACACCAAATTCACCAAAGACCACAACACCTGGTGACAGCGAATTCAATGACCAAGCAGAGAAAATGGAGCAGGATTTAGAAAAACAAGTGTCCAATGAACTAATTGACATCACTACTAAGGAGGATCCAAAAGGGTCACCAGTCTCATTATTATCTTGTGGTGAGTCAAACATTGTAAACACAAGCCAAATTGTTGAACAATTGGCCTCTCCAATACCCTACATAGGAGCCTATGATGTTGGAAGTTTATTAGAAGAGGTGGTTGATAAACCAAACCACCTGATTGAGATTCCATGGGATCCAGACTATGATTTTTGGAAGTTGTTAGATGATGATAGCCTTGTTGGATCTTTTCAATCAAGTGATCAAGTCCAATTAGGTGAGTTTCCAGCCATACAAAACATCATTCTCGGAGAAGAAGAGTGTGTTGTTCAAGATGTTGATGAAGCCAACAAAAAGTGGTCCCAAGAATTTGAGAATGAGTTTGAGTTTGGAGTAGTAGGTATATATACTTACTGA 885 0.4068 MGKGRAPCCDKTQVKRGLLRCGKSCRLRWINYLRPDVKRGNFTPEEEETIIKLHKALGNKWSKIAAGLPGRTDNEIKNVWNTHLKKRLSPKKGSDSSADESKPESSITSSSSSSSESFFSNETPNSPKTTTPGDSEFNDQAEKMEQDLEKQVSNELIDITTKEDPKGSPVSLLSCGESNIVNTSQIVEQLASPIPYIGAYDVGSLLEEVVDKPNHLIEIPWDPDYDFWKLLDDDSLVGSFQSSDQVQLGEFPAIQNIILGEEECVVQDVDEANKKWSQEFENEFEFGVVGIYTY 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0311 294 MobiDBLite consensus disorder prediction 84 137 - -
Aed1g0311 294 PANTHER - 17 286 - -
Aed1g0311 294 CDD SANT 41 84 IPR001005 -
Aed1g0311 294 Coils Coil 138 158 - -
Aed1g0311 294 ProSiteProfiles Myb-like domain profile. 34 84 IPR001005 -
Aed1g0311 294 Gene3D - 11 38 - -
Aed1g0311 294 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 17 286 - -
Aed1g0311 294 SMART sant 38 86 IPR001005 -
Aed1g0311 294 MobiDBLite consensus disorder prediction 84 99 - -
Aed1g0311 294 MobiDBLite consensus disorder prediction 100 137 - -
Aed1g0311 294 Gene3D - 41 114 - -
Aed1g0311 294 Pfam Myb-like DNA-binding domain 39 84 IPR001005 -
Aed1g0311 294 SUPERFAMILY Homeodomain-like 20 89 IPR009057 -
Aed1g0311 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 88 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0311 Aed-Chr1 4815280 4818063 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0311 1 90 MYB Transcription Factor Family AT1G56160 63.333 4.43e-47 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aed1g0311 Myb_DNA-binding 4.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0311 K09422 - gmx:100101836 422.165