Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0301 ATGCAAGAGATTACTGCTACACCACCAACAATACAATCCAATTTCCTAGAAGGGTTTGTTGTGCCTGATGACAATTATTGCTCCTTGCAAGTTGAGGAACTGTATCCATATCCACAACTCTTCTCTGAGGTTCCACAATATGGTAGCACTACTACTTGTGTGGATGTTCATGAGTGTGAGAAGAAAGGTAATAACAATGAGAGAAGAACGATATCTCCACAGAGCGTGGCGGCGAGAGAAAGGAGAAGAAAGATCACTGAGAAGACACAAGAGCTTGGGAAGTTGGTTCCTGGTGGACCAAAGATGAACACTGCTGAGATGCTTCATGCTGCTGCTAAGTATGTTATGTTCCTTCAAGCACAAGTTGGAATGCTTCAACTCATTAACACACTCGAGGAAGATAAAGCAACACCATATCCTTCTGATGAAAATCTACACTCTCTAGTTGTTTCTCCCTTTGTTCAAGAGAAGTTGTACACTGAGGAAATGTGCTTTGTGCCAAAAGAATCTGTCACCACTTTGACAAATAATGAGGATGTTCAATCAAAACCTATCATCATTGAGGATCTTAAACAGCTGATTGGAACAGACAATATTGAGAAGAAACCAAAGCAAGAATAA 621 0.4058 MQEITATPPTIQSNFLEGFVVPDDNYCSLQVEELYPYPQLFSEVPQYGSTTTCVDVHECEKKGNNNERRTISPQSVAARERRRKITEKTQELGKLVPGGPKMNTAEMLHAAAKYVMFLQAQVGMLQLINTLEEDKATPYPSDENLHSLVVSPFVQEKLYTEEMCFVPKESVTTLTNNEDVQSKPIIIEDLKQLIGTDNIEKKPKQE 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0301 206 Gene3D - 66 137 IPR036638 GO:0046983
Aed1g0301 206 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 15 190 - -
Aed1g0301 206 SMART finulus 75 124 IPR011598 GO:0046983
Aed1g0301 206 Pfam Helix-loop-helix DNA-binding domain 79 119 IPR011598 GO:0046983
Aed1g0301 206 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 69 118 IPR011598 GO:0046983
Aed1g0301 206 PANTHER TRANSCRIPTION FACTOR BHLH52-RELATED 15 190 - -
Aed1g0301 206 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 67 129 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0301 Aed-Chr1 4713624 4714925 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0301 65 197 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 48.905 6.70e-30 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed1g0301 HLH 2.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0301 - - gmx:102665938 277.33