Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0300 ATGCAAGAGATTACTACTACACCACCAACACTACAATCCAATTTCCTAGAAGGGTTTGCTGTGCCTTATGACAATTGTTGCTCCTTGCAAGTTGAGGAACTGTATCCATATCCACAACTCTTCCCTGAGGTTCCACAATATGGTAGTACTACTAATTGTGTGGATTTTCATGAGTGTGAGAAGAAAGGTAGTAACAACGAGAGAAGAACGATATCTACGCAGAGCGTGGCAGCGAGAGAAAGGAGAAGAAAGATCACTCAGAAAACTCAAGAGCTTGGGAAGTTGGTTCCTGGTGGACCAAAGATGAACACTGCTGAGATGCTTCATGCTGCTGCTAAGTATGTTATGTTCCTTCAAGCACAAGTTGGAATGCTTCAACTCACTAACACACTCGAGGAAGATAAAGCAGAACCTCCTTCTGAAATTCTACCAGCTCTGGTTGTTTCTCCCTTTGTTCAAGAGAAGTTGTACACTGAGGAAATGTGCTTTGTTCCAAAAGACACTGTCACCACTTTGACAAATCATGAGGATGTTCAATCAAAACCTACCATCATTGAGGATCTTAAACAGCTGATTGGAACAGACATTGAGAAGAAACCAAAGCAAGAATAA 612 0.4167 MQEITTTPPTLQSNFLEGFAVPYDNCCSLQVEELYPYPQLFPEVPQYGSTTNCVDFHECEKKGSNNERRTISTQSVAARERRRKITQKTQELGKLVPGGPKMNTAEMLHAAAKYVMFLQAQVGMLQLTNTLEEDKAEPPSEILPALVVSPFVQEKLYTEEMCFVPKDTVTTLTNHEDVQSKPTIIEDLKQLIGTDIEKKPKQE 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0300 203 CDD bHLH_AtbHLH_like 74 126 IPR045239 -
Aed1g0300 203 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 66 129 IPR036638 GO:0046983
Aed1g0300 203 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 69 118 IPR011598 GO:0046983
Aed1g0300 203 Pfam Helix-loop-helix DNA-binding domain 77 119 IPR011598 GO:0046983
Aed1g0300 203 Gene3D - 66 137 IPR036638 GO:0046983
Aed1g0300 203 PANTHER TRANSCRIPTION FACTOR BHLH52-RELATED 28 188 - -
Aed1g0300 203 SMART finulus 75 124 IPR011598 GO:0046983
Aed1g0300 203 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 28 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0300 Aed-Chr1 4709509 4710809 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0300 55 196 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 45.578 1.54e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed1g0300 HLH 1.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0300 - - gmx:102665938 289.656