Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0249 ATGGGTCACCGATGCTGCAGCAAACAGAAGATCAAAAGAGGGTTATGGTCTCCTGAAGAAGATGAGAAACTTCTGAAATATATCAACACACATGGTTTGCAGAGATGTGGGAAGAGTTGCAGGTTGAGATGGATTAATTATCTAAGGCCAGATCTGAAGAGGGGTTCCTTCACTGCTGAAGAAGAGATGATCATAATTGACATTCATAGAATTCTGGGAAACAGATGGGCGCAAATAGCAAAACACCTACCAGGAAGAACAGACAATGAGGTCAAGAATTTCTGGAACTCATGCATAAAAAAGAAGCTCATTTCACAAGGGTTGGATCCACAAACCCACAATCTCCTCTCTTCTCATATGAGAAGCTCAAAAATATGCACCATCTCCAATAATAACATCCATCAAAACTCCAATAATTCCATTTTCATCATGAGTACTTCTTCATCACACATGCCAAAATCAAAAATGGATCAAACTACATGTCAAACATTTCCACCAAACATTGTTCAAACTCCCTCTAGTATTGTCACCACTGAATTTCAAACACCATCAACTATTTTTTCAAACAAGTTCTCATCAGATAATAATTTGCCTTATGAACTACTAATGGAGAATGCCACCAACATTTGTTCACCTTCATACATTGACAACAATGTGAATTGGGTTTCAAGAGTTAATGTTGATGATTTGATGAGTGCTCAAATATTATTGGAAGAGGGAACACAAGTGGTGCAGAATGATGAAAAGGACAAGACTTGTGATGAGAATATTAAGGGAAATCTTGAAAATACTACCAGTGCTTCTTTTGAGATCAGTTCTAACTTTGATTTTGGGTTGTTGGAGAGTGTACTTACCTCTGAATTCATCTCTCATGATCTCAATTATTGTATGGATGAACTTGCATGGAGCATTTAG 915 0.3738 MGHRCCSKQKIKRGLWSPEEDEKLLKYINTHGLQRCGKSCRLRWINYLRPDLKRGSFTAEEEMIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLISQGLDPQTHNLLSSHMRSSKICTISNNNIHQNSNNSIFIMSTSSSHMPKSKMDQTTCQTFPPNIVQTPSSIVTTEFQTPSTIFSNKFSSDNNLPYELLMENATNICSPSYIDNNVNWVSRVNVDDLMSAQILLEEGTQVVQNDEKDKTCDENIKGNLENTTSASFEISSNFDFGLLESVLTSEFISHDLNYCMDELAWSI 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0249 304 ProSiteProfiles Myb-like domain profile. 49 99 IPR001005 -
Aed1g0249 304 SMART sant 53 101 IPR001005 -
Aed1g0249 304 SMART sant 12 50 IPR001005 -
Aed1g0249 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 49 103 IPR017930 -
Aed1g0249 304 CDD SANT 56 96 IPR001005 -
Aed1g0249 304 PANTHER BNAC05G40480D PROTEIN 1 291 - -
Aed1g0249 304 SUPERFAMILY Homeodomain-like 10 95 IPR009057 -
Aed1g0249 304 Pfam Myb-like DNA-binding domain 54 97 IPR001005 -
Aed1g0249 304 Pfam Myb-like DNA-binding domain 13 48 IPR001005 -
Aed1g0249 304 Gene3D - 55 127 - -
Aed1g0249 304 Gene3D - 10 54 - -
Aed1g0249 304 PANTHER MYB DOMAIN PROTEIN 55 1 291 - -
Aed1g0249 304 ProSiteProfiles Myb-like domain profile. 8 48 IPR001005 -
Aed1g0249 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 48 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0249 Aed-Chr1 4213253 4215202 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0249 1 121 MYB Transcription Factor Family AT3G12720 78.947 3.36e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed1g0249 Myb_DNA-binding 8.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0249 K09422 - gmx:100791209 427.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0249 1 4213253 4215202 Aed1g0249 1 4213253 4215202 ECH