Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0208 ATGGGAACACCTGTGAACATCATCGTTGGATCACAGGTTTGGGTTGAGGATCCTGAGGATGCATGGATTGATGGTGAGGTGACAGAATTCAAAGGCAAAAATGCCACCATCATTGCCACAAATGGGAAAACTGTGGTGGCAGAAATTTCAAGCATATACCCCAAAGACACAGAGGCACCACCTGCAGGAGTTGATGACATGACCAAGCTAGCATACCTTCATGAACCAGGAGTTCTGCATAACCTTGCAATTCGTTTTTCTCTCAATGAGATATATACATACACAGGGAATATCTTAATTGCGGTGAATCCTTTTCGAAGACTGCCACACTTGTATGACATTCATATGATGGAGCAGTACAAAGGAGCAGCATTTGGAGAGCTTAGTCCTCACCTTTTTGCTAGTGGAGCTGGTAAAACCGAGACAACGAAAATGCTCATGAGATATCTAGCATTCATGGGGGGTAGAGCTGCCACAGAAGGAAGAACTGTAGAACAACAGGTTTTGGAGGTGATGACATACATTTTCACTTGTGCAGTCCAATCCAGTGTTGGAAGCATTTGGAAATGCCAAAACTGTAAAAAACAACAATTCAAGGATGTCAAGAAGTTCAAGTTAGGGGATCCAAGGCAGTTTCACTATCTTAATCAATCAAGCTGTTATCAAGTGTCAAATGTAGATGATGCAAAAGAATACTTGGAGACCAGAAATGCAATGGATATTCCAAGAAGAGCAGGGAAAGAATTTGATTCTTCCAAATTGAAAGATGATAAATCACTCTTCCACCTCCAAACAGCTGCTGAGTTATTCATGTCTGATGCAAAAGCACTAGAAGACTCACTTTGCGAGCGTGTCATTGTAACTCCTGATGGTAACATTACCAAACCTCTAGACCCAGATGCAGCCGCTTTGAGCCGAGATGCCTTGGCAAAGACTGTCTACTCCAAATTGATTGTTGACAAGATTAACAGTTCAATTGGTCAAGATTCCAATGCAGTAAGCATAATAGGAGTGCTTGACATTTATGGATTTGAAAGCTTCAAAATCAACAGTTTTGAGCAACTATGCATCAACCTAACAAATGAGAAGTTGCAACAACATTTTAATCAGGCAAGCATGTATTCAAGATGGAGCAAGAAGAGTACACTAAGGAAGAAATCAATTGGAGCTATCATGTTCCCCAAATCAACTCATGAGACTTTTGCACAAAAGATGTACCAGACATATAAAGCACACAAGCGCTTCAGCAAGCCAAAACTTTCTAGAACAAATTTCACAATTAATCATTATGCTGGAGATGTCACATATCAAGCAGATTATTTTCTTGATAAAAACAAAGACTATGTTGTAGCAGAGCATCAAGCTCTTTTATGTGCTTCCAAGTGTCCATTTGGAGTACTTGAGGCAATAAGAATTAGTTGTGCTGGATATCCAACAAAAAGGACATTTGAAGAATTTCTTGATCGCTTTGGAATGCTAGCTCCTGATGTCCTTGATGGCTCTGATGAGAAAAAGGCATCTATGGCCATCTGTGATAAGATGGGCTTAAAAGGCTATCAAATGGGGAAAACAAAGGTCTTTCTCAGAGCTGGTCAGATGGCTGAATTAGATGCACGAAGAGCTGAAGTCTTGGCTAAAGCAGCTAAACTCATACAGAGACAAATCCGAACACATTTAACCAGAAAGGAGTTCATCACCCTTAGAAAGGCCACGATTCCTTCTATCAGGATACAGAAACACGTGCGAGCACACAGAGCAAGAATGAATTATACAACGTTACAAGCATCAGCTATAGTTATTCAATCAGGGTTGAGAGCATTAGCAGCACGAAATGAATATAGGTACAGAAGAAGAACAAAGGCTTCAACAAAAATTCAGACACAATGGAGAAGAGCCCAAGCTCTTTCTGATTACAAACAGCAGAAGAAATCAACTGTTACACTTCAATGTCTATGGAGAGCTAAAGTAGCAAGGAAAGAGCTCAGAAAGCTTCGGATGGAAGCAAAGGACAAGTTGGAGAAGCGTGTTGAGGAGCTTACATGGAGACTAGATATTGAAAAGCACATGAGGGTGGATCTTGAAGAAGCTAAAGGGCAAGAGGTTGCAAAATTGCAAAATGCTTTACAAGAAATGCAAGCTCAGTTAGATGAAGCACATGCTGCAATTGTACATGAGAGAGAAGCAGCAAAAATAGCAATTGAACAAGCACCACCAGTAATTAAAGAGGTTCCTGTTGTGGATGACACCAAGCTAGAGTTACTGACAAATAAAAATGAGGAGTTGGAGACTGAAGTAGAAGAGCTGAAAAAGAGGATTAAAGAGTTTGAAGAAAAGTTCTCAGAAGTTGAGAATGAGAACCAAGGAAGGCTGAAAGAGGCAGAAGAAGCACAGCTTAAAGCAACACAACTTCAGGAGAATATTGAAAGATTAGAGTTGAGTTTGTCAAACCTTGAGTCTGAGAACCAGGTCCTATGCCAGAAGGCTTTGGAAGAATCAAAGAATGAAGAACTCTTTGAAGAGATCAAAATCCTCAAGGGTCAGATAGAAAATCTAGAATCAGAGAACGAATTCCTACGGAGCCAGGCAGCAGCTGCTGCTTTAGAGCAGAAAGTTCATCCAGAAAAAACAGAACCAGACCATTCAGAAGCTGCTTTGGAGCAGAAAGTTCATCCAGAAAAACTAGAACTAGACCATTCAGAAGCTGCTTTAGAGCTTAAAGTTCATCCAGATAAAATAGAACTAGACCATTCAGCAGCTGCTTTAGACTTAGAGCAGAAAGTTCATCCAGAAAAAATAGAACCAGACCATGAAGTTTCTGTTGTAGAGAAGATGCAAGTGCAACCAAGAGTTATTGCAGATAATATTATGACTTCACAAATCAAGAATTTGGATAATGGAAATCCAACAGAGGAAGAGTGGCATGCAAGAAAAAGTCAAGAAGGAATCCATGATCTAGCCTACTGGCTTTCAACAACTTCAACGCTTCTGTTTTATCTACAATGCACAATGAAGGCCAGCAATACAACCAAGGCAGTGTCACGTAATCGAAACTCCCCCGCTACTTTGTTTGGCAAAATGGCACAAGGTTTACGTTCATCTTCACTGGGATTGGGGATTTCAAGCGGCTACAGTGGAATGGTGGACAAGCCAAATGATCAATCTAAAGTAGAAGCCAAGTATCCTGCTATTCTGTTTAAGCAACATTTAACTGCATATGTTGAGAAGATATATGGAATGATTCGTGATAGTTTAAAGAAAGAGATTAGTCCATTCTTAAACTTGTGTATACAGGCACCAAGATCCATAAGGACTAGATCAATAAGAGGGTCATCTAGAAACATTCATTCAAACATTGTTGCAAAACAACAGGCAATGCATATGTACTGGAAAGGAATTGTGGACAAATTAGACACTGCCTTGCGTATATTGTCTGATAACTATGCAGGTTTGCATGAGTTGGAACTATGGTGTCTTAAAGCAACAAACCAGTTTGCTGGGTCATCCTGGGATGAACTCAAACACATACGCCAAGCTGTAGGCTTTCTGGTGTTAAGTATTCCACAAATATACCGTATAGGAACTATGTTCTGGGATGACAAGTATGGAGCACAGGGATTATCTGCAGAAGAATTGAACTCAACTCGAGTAACATAA 3654 0.4023 MGTPVNIIVGSQVWVEDPEDAWIDGEVTEFKGKNATIIATNGKTVVAEISSIYPKDTEAPPAGVDDMTKLAYLHEPGVLHNLAIRFSLNEIYTYTGNILIAVNPFRRLPHLYDIHMMEQYKGAAFGELSPHLFASGAGKTETTKMLMRYLAFMGGRAATEGRTVEQQVLEVMTYIFTCAVQSSVGSIWKCQNCKKQQFKDVKKFKLGDPRQFHYLNQSSCYQVSNVDDAKEYLETRNAMDIPRRAGKEFDSSKLKDDKSLFHLQTAAELFMSDAKALEDSLCERVIVTPDGNITKPLDPDAAALSRDALAKTVYSKLIVDKINSSIGQDSNAVSIIGVLDIYGFESFKINSFEQLCINLTNEKLQQHFNQASMYSRWSKKSTLRKKSIGAIMFPKSTHETFAQKMYQTYKAHKRFSKPKLSRTNFTINHYAGDVTYQADYFLDKNKDYVVAEHQALLCASKCPFGVLEAIRISCAGYPTKRTFEEFLDRFGMLAPDVLDGSDEKKASMAICDKMGLKGYQMGKTKVFLRAGQMAELDARRAEVLAKAAKLIQRQIRTHLTRKEFITLRKATIPSIRIQKHVRAHRARMNYTTLQASAIVIQSGLRALAARNEYRYRRRTKASTKIQTQWRRAQALSDYKQQKKSTVTLQCLWRAKVARKELRKLRMEAKDKLEKRVEELTWRLDIEKHMRVDLEEAKGQEVAKLQNALQEMQAQLDEAHAAIVHEREAAKIAIEQAPPVIKEVPVVDDTKLELLTNKNEELETEVEELKKRIKEFEEKFSEVENENQGRLKEAEEAQLKATQLQENIERLELSLSNLESENQVLCQKALEESKNEELFEEIKILKGQIENLESENEFLRSQAAAAALEQKVHPEKTEPDHSEAALEQKVHPEKLELDHSEAALELKVHPDKIELDHSAAALDLEQKVHPEKIEPDHEVSVVEKMQVQPRVIADNIMTSQIKNLDNGNPTEEEWHARKSQEGIHDLAYWLSTTSTLLFYLQCTMKASNTTKAVSRNRNSPATLFGKMAQGLRSSSLGLGISSGYSGMVDKPNDQSKVEAKYPAILFKQHLTAYVEKIYGMIRDSLKKEISPFLNLCIQAPRSIRTRSIRGSSRNIHSNIVAKQQAMHMYWKGIVDKLDTALRILSDNYAGLHELELWCLKATNQFAGSSWDELKHIRQAVGFLVLSIPQIYRIGTMFWDDKYGAQGLSAEELNSTRVT 1217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0208 1217 ProSiteProfiles Myosin motor domain profile. 465 541 IPR001609 GO:0003774|GO:0005524|GO:0016459
Aed1g0208 1217 Gene3D - 190 239 - -
Aed1g0208 1217 ProSiteProfiles Myosin motor domain profile. 62 464 IPR001609 GO:0003774|GO:0005524|GO:0016459
Aed1g0208 1217 PANTHER MYOSIN-12 19 170 - -
Aed1g0208 1217 Gene3D Myosin VI head, motor domain, U50 subdomain 250 328 - -
Aed1g0208 1217 Gene3D Kinesin motor domain 12 134 IPR036961 -
Aed1g0208 1217 ProSiteProfiles Dilute domain profile. 953 1217 IPR002710 -
Aed1g0208 1217 Gene3D - 382 470 - -
Aed1g0208 1217 ProSiteProfiles IQ motif profile. 618 647 IPR000048 GO:0005515
Aed1g0208 1217 Gene3D Kinesin motor domain 329 344 IPR036961 -
Aed1g0208 1217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 590 669 IPR027417 -
Aed1g0208 1217 Pfam Myosin head (motor domain) 392 463 IPR001609 GO:0003774|GO:0005524|GO:0016459
Aed1g0208 1217 Pfam Myosin head (motor domain) 258 372 IPR001609 GO:0003774|GO:0005524|GO:0016459
Aed1g0208 1217 Pfam Myosin head (motor domain) 464 529 IPR001609 GO:0003774|GO:0005524|GO:0016459
Aed1g0208 1217 Pfam Myosin head (motor domain) 64 134 IPR001609 GO:0003774|GO:0005524|GO:0016459
Aed1g0208 1217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 601 IPR027417 -
Aed1g0208 1217 SMART MYSc_2a 56 542 IPR001609 GO:0003774|GO:0005524|GO:0016459
Aed1g0208 1217 PANTHER MYOSIN-12 199 464 - -
Aed1g0208 1217 PANTHER MYOSIN-12 1148 1209 - -
Aed1g0208 1217 Gene3D - 345 372 - -
Aed1g0208 1217 ProSiteProfiles IQ motif profile. 641 670 IPR000048 GO:0005515
Aed1g0208 1217 ProSiteProfiles IQ motif profile. 570 596 IPR000048 GO:0005515
Aed1g0208 1217 PANTHER MYOSIN-12 465 1147 - -
Aed1g0208 1217 Coils Coil 694 728 - -
Aed1g0208 1217 Gene3D Kinesin motor domain 135 179 IPR036961 -
Aed1g0208 1217 PANTHER MYOSIN 19 170 - -
Aed1g0208 1217 Coils Coil 533 553 - -
Aed1g0208 1217 Pfam IQ calmodulin-binding motif 595 614 IPR000048 GO:0005515
Aed1g0208 1217 Pfam IQ calmodulin-binding motif 575 590 IPR000048 GO:0005515
Aed1g0208 1217 Pfam IQ calmodulin-binding motif 546 564 IPR000048 GO:0005515
Aed1g0208 1217 Pfam IQ calmodulin-binding motif 643 662 IPR000048 GO:0005515
Aed1g0208 1217 SMART iq_5 640 662 IPR000048 GO:0005515
Aed1g0208 1217 SMART iq_5 569 591 IPR000048 GO:0005515
Aed1g0208 1217 SMART iq_5 592 614 IPR000048 GO:0005515
Aed1g0208 1217 SMART iq_5 543 565 IPR000048 GO:0005515
Aed1g0208 1217 SMART iq_5 617 639 IPR000048 GO:0005515
Aed1g0208 1217 Gene3D - 476 575 - -
Aed1g0208 1217 ProSiteProfiles IQ motif profile. 593 622 IPR000048 GO:0005515
Aed1g0208 1217 PANTHER MYOSIN 1148 1209 - -
Aed1g0208 1217 PANTHER MYOSIN 465 1147 - -
Aed1g0208 1217 ProSiteProfiles IQ motif profile. 544 573 IPR000048 GO:0005515
Aed1g0208 1217 Coils Coil 654 689 - -
Aed1g0208 1217 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Aed1g0208 1217 Coils Coil 751 868 - -
Aed1g0208 1217 Pfam Myosin N-terminal SH3-like domain 10 47 IPR004009 GO:0003774|GO:0005524|GO:0016459
Aed1g0208 1217 Gene3D - 576 619 - -
Aed1g0208 1217 Gene3D - 620 669 - -
Aed1g0208 1217 PANTHER MYOSIN 199 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0208 Aed-Chr1 3566906 3581846 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0208 1 1216 Myosins gene family AT1G54560 38.667 0.0 809
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0208 K10357 - gmx:100817933 1083.94