Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0206 ATGATGCCAAGCAATGGACAGTTAACAGTTCCTCCAGGCTTCAGATTCCACCCTACTGATGAGGAACTTCTGTACTATTATCTGAGGAAAAAAGTTTCTTATGAAGCCATTGATCTTGATGTCATCAGAGAAGTAGATCTCAACAAACTTGAGCCTTGGGACCTCAAAGGTACACAACACATTCATCATAATAAAAGAGAAGATGGGTGGGTGGTATGCAGAGTCTTCAAAAAGAAAAACCAAATCAACCGAGGCTTCCAACAAGAAATTGATCAAGAAGATCATCAGGAGCACTTAATGACCCACATGAGAGCAAGTGGTCCATGCCATGTTCATCTAGAGCCAACAAAGCATCATCACATGCAAGGAGGAGTAGCAGCACTCTATGATCATCATAGCTACAACAACAACTTTGATGGAACAATGCACCTCCCACAGTTGTTCAGTCCAGAATCAGCTGTTGCAGCACCACCAACAACCACCACTACTTCCATGAATGCCATGGACATCCTTGAGTGCTCTCAAAACCTCTTGAGGCTCACAACAACAACAACAACCAATGGCTGTGGACTTAACCTTATGCAGCAACAAGGTGAGAGGTTCAGTGGTGATTGGTCTTTCTTGGATAAGCTACTAGCATCACATTCACATTCACACCATGGCATGGATCATCAAAGCAAATGTAATAACCCTACTCCTACTGCTGCTGCTGCTGTTGGCACTTCAGCACAGAAATTCCCATTTCATTACCTTGGCTGTGACACCACCACCCTTGATATTATGAAATTTTCCAAGTAG 798 0.4323 MMPSNGQLTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNKLEPWDLKGTQHIHHNKREDGWVVCRVFKKKNQINRGFQQEIDQEDHQEHLMTHMRASGPCHVHLEPTKHHHMQGGVAALYDHHSYNNNFDGTMHLPQLFSPESAVAAPPTTTTTSMNAMDILECSQNLLRLTTTTTTNGCGLNLMQQQGERFSGDWSFLDKLLASHSHSHHGMDHQSKCNNPTPTAAAAVGTSAQKFPFHYLGCDTTTLDIMKFSK 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0206 265 Pfam No apical meristem (NAM) protein 11 79 IPR003441 GO:0003677|GO:0006355
Aed1g0206 265 ProSiteProfiles NAC domain profile. 10 183 IPR003441 GO:0003677|GO:0006355
Aed1g0206 265 Gene3D NAC domain 19 66 IPR036093 GO:0003677|GO:0006355
Aed1g0206 265 PANTHER NAC (NO APICAL MERISTEM) DOMAIN TRANSCRIPTIONAL REGULATOR SUPERFAMILY PROTEIN-RELATED 6 58 - -
Aed1g0206 265 SUPERFAMILY NAC domain 3 71 IPR036093 GO:0003677|GO:0006355
Aed1g0206 265 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 6 58 - -
Aed1g0206 265 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 64 248 - -
Aed1g0206 265 PANTHER NAC (NO APICAL MERISTEM) DOMAIN TRANSCRIPTIONAL REGULATOR SUPERFAMILY PROTEIN-RELATED 64 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0206 Aed-Chr1 3543239 3545614 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0206 6 56 NAC Transcription Factor Family AT1G79580 90.196 1.94e-26 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aed1g0206 NAM 4.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0206 - - gmx:100789606 237.269