Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0171 ATGGCGGAGGCAAAAACCTACTGGTGCCACGAATGCGACATGAGCGTGTCTCTCACGCTCCCTCCCTCCCCTCTCCTCTGCCCGCACTGCAACACTCACTTCCTCGAACTCATGGACTCCCCCTCACTCACCCTCCCCCAAAACGACGCCGATTCACCACTCTTCGACGTCGTTTTCCAAGACGCGCTCTTACTCCTCTCTCCGAACCCCAAACCAAAACCCAAACCCAAACCCCTCCCCTCCCTCCACGTCACCCCCTCCCTCCTCTCCTCGCTCGACCCTAACGGCGTCGTTCTCTGCGCCGTCTGCAAATACCAAATCACCCTCGACCTCGAAACTAAAGCCAAGCAGCTCCCCTGCAAACACCTCTACCACGCCGATTGCATCACGCCGTGGCTCGAACTCCACGCGTCGTGTCCTCTATGCAGGCTTCGCTTAGAGGAAGAGCTAGAGGACGACGAGGAGGATGAAATCGGCGACGGCGTTATGACGGAGATCAGGAGGGAGCTCATTTCGCGGCTCACGGAGCTGACGGAGGAGGATTTCTACGGCTTGAGGACCACGCTCAGCCACATTGCCTCAAGGCGCGCGCGAATCGAAGAAGAAGAGAACGAGAATCGCGCGCCGCAACTCGCTGATCCTCGTTTATAA 651 0.5837 MAEAKTYWCHECDMSVSLTLPPSPLLCPHCNTHFLELMDSPSLTLPQNDADSPLFDVVFQDALLLLSPNPKPKPKPKPLPSLHVTPSLLSSLDPNGVVLCAVCKYQITLDLETKAKQLPCKHLYHADCITPWLELHASCPLCRLRLEEELEDDEEDEIGDGVMTEIRRELISRLTELTEEDFYGLRTTLSHIASRRARIEEEENENRAPQLADPRL 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0171 216 Pfam Ring finger domain 100 143 IPR001841 -
Aed1g0171 216 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 72 178 - -
Aed1g0171 216 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 2 52 - -
Aed1g0171 216 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 72 178 - -
Aed1g0171 216 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 52 - -
Aed1g0171 216 ProSiteProfiles Zinc finger RING-type profile. 100 143 IPR001841 -
Aed1g0171 216 SUPERFAMILY RING/U-box 99 148 - -
Aed1g0171 216 Pfam zinc-ribbon 6 38 IPR039525 GO:0061630
Aed1g0171 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 160 IPR013083 -
Aed1g0171 216 SMART ring_2 100 142 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0171 Aed-Chr1 3084605 3087595 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0171 3 146 C3H Transcription Factor Family AT3G60080 33.816 1.98e-23 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0171 K11982 - gmx:100782164 272.707