Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0147 ATGGAGCATTTGAGCCGAATAGAGGAGCGTATGAGATGCCTTCAAGCAGTAGTTTTCAGGTCTAGGCAGCGTCAGATGTGGCGGCTGACTCACGCTCCAATTCGGATAACCAACTATGATGGGGAATTGGTAACGGTGGCCGACCTTCAAGCTGAAGAAGACAGGGTGCATCGGGAGTTTGGTGGTTTTGATGTTGTTGGAGGGGAGATGGTGGTAACAGGTAATAAAAGGAAGGCTAGCTATTTAGTTGCTAAAGCATTGGGTGTGGAAACCCATCAGGGTGAGGGTTTTGCAACAAACTTGTTTCATTGCAATGTATGCATGGACAGGGCAAGGGATCCGGTTTTGACTTGCTGTGGTCACTTGTTCTGCTGGCCATGCTTTCACAAGTTGTCATGTGATGATTATTCAAATGTGAGGGAATGTCCGGTTTGTAGAGGAGATGTCAATGAAGCAGGAATTATCCCAATTTATGGCAATGCAAATGTTGATGATAGTAGTGGCCAGTTCAGCTCGGATGAAACCAGTTCGACAGTTCCCGCTCGGCCTCGGCCGCAGAGAATTGAGAGTATCAGGCAGCGGTTCAGATACTGA 594 0.4764 MEHLSRIEERMRCLQAVVFRSRQRQMWRLTHAPIRITNYDGELVTVADLQAEEDRVHREFGGFDVVGGEMVVTGNKRKASYLVAKALGVETHQGEGFATNLFHCNVCMDRARDPVLTCCGHLFCWPCFHKLSCDDYSNVRECPVCRGDVNEAGIIPIYGNANVDDSSGQFSSDETSSTVPARPRPQRIESIRQRFRY 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0147 197 MobiDBLite consensus disorder prediction 165 185 - -
Aed1g0147 197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 165 IPR013083 -
Aed1g0147 197 Pfam Zinc finger, C3HC4 type (RING finger) 103 150 - -
Aed1g0147 197 MobiDBLite consensus disorder prediction 165 183 - -
Aed1g0147 197 SMART ring_2 104 145 IPR001841 -
Aed1g0147 197 SUPERFAMILY RING/U-box 103 151 - -
Aed1g0147 197 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Aed1g0147 197 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 5 195 IPR045103 GO:0005783|GO:0006511|GO:0061630
Aed1g0147 197 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 5 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0147 Aed-Chr1 2854752 2855345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0147 34 196 C3H Transcription Factor Family AT3G58030 34.356 1.55e-24 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0147 K10666 - gmx:100778919 317.005