Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0143 ATGGGAGGTTCTTCGAGGGGCTTGGACGTGAACGCGCAGCCGACGGCGGTAGAGGATGAGGCAGCGGCGCTCTCCTCGTCTCCAAACAGCGCGGCTTCATCGTTTCAAATGGATCTCTGCATATACAACAACAGAGGAGGGAGCTCCTCATACAAGAGGGACTTTGAGGGTGAGGCCTATGATCATCACCAAAGGGCCTCTTCAAGAGCCAGCGACGAGGACGACAATAACGGCGGCACCAGAAAGAAACTCAGACTCTCCAAGGATCAATCCGCGTTCCTTGAAGAGAGTTTCAAGGAACACAACACTCTTAACCCTAAACAAAAGCTTGCTCTTGCTAAACAACTCAATCTTCAACCTCGCCAAGTAGAAGTTTGGTTCCAAAATCGTCGAGCAAGGACAAAGTTGAAGCAAACAGAAGTGGATTGTGAGTACTTGAAGAGGTGTTGTGAGACACTAACGGAAGAGAATAGAAGGCTTCACAAGGAGCTTCAAGAATTGAGGGCTTTGAAGACTAATTCATCAAACCCATTCTACATGCAATTACCAGCCACAACTTTGACTATGTGCCCTTCTTGTGAGCGCGTGGCCACAAATTCCACATCCACTACCACTTCCTCCGCTCATGTTAATCTTCCTAGTGCAAACAATGCTACTAATAATTCAGGAGGAGCCATGGCTAGTGTCAAAACAAGTAATATTAATAACAACATCAACAATGACTCGTCATCACCCTCCAAAGCCATTGGATTCCCCTTTGGTAAACCAAGGTTTCACCCATTTGTTCACGCTAGCCAACAACAACAACACCAATCCCCAGCATCTTGA 828 0.4698 MGGSSRGLDVNAQPTAVEDEAAALSSSPNSAASSFQMDLCIYNNRGGSSSYKRDFEGEAYDHHQRASSRASDEDDNNGGTRKKLRLSKDQSAFLEESFKEHNTLNPKQKLALAKQLNLQPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKTNSSNPFYMQLPATTLTMCPSCERVATNSTSTTTSSAHVNLPSANNATNNSGGAMASVKTSNINNNINNDSSSPSKAIGFPFGKPRFHPFVHASQQQQHQSPAS 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0143 275 ProSitePatterns 'Homeobox' domain signature. 112 135 IPR017970 GO:0000981|GO:0006355
Aed1g0143 275 PANTHER PROTEIN, PUTATIVE-RELATED 5 268 - -
Aed1g0143 275 ProSiteProfiles 'Homeobox' domain profile. 77 137 IPR001356 GO:0003677
Aed1g0143 275 SMART halz 137 182 IPR003106 GO:0006355|GO:0043565
Aed1g0143 275 Gene3D - 85 135 - -
Aed1g0143 275 Pfam Homeodomain 81 135 IPR001356 GO:0003677
Aed1g0143 275 SMART HOX_1 79 141 IPR001356 GO:0003677
Aed1g0143 275 CDD homeodomain 81 138 IPR001356 GO:0003677
Aed1g0143 275 PANTHER - 5 268 - -
Aed1g0143 275 MobiDBLite consensus disorder prediction 238 275 - -
Aed1g0143 275 SUPERFAMILY Homeodomain-like 66 138 IPR009057 -
Aed1g0143 275 Pfam Homeobox associated leucine zipper 137 171 IPR003106 GO:0006355|GO:0043565
Aed1g0143 275 Coils Coil 150 173 - -
Aed1g0143 275 MobiDBLite consensus disorder prediction 59 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0143 Aed-Chr1 2761966 2764861 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0143 6 202 Homeobox Transcription Factor Family AT5G47370 60.294 4.97e-70 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aed1g0143 Homeodomain 9.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0143 K09338 - gmx:100778742 385.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0143 1 2761966 2764861 Aed1g0143 1 2761966 2764861 ECH