Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0117 ATGGGAAAGTTATCAATCATGTTGTACGATAGGTGCAGGAACCGCAACAAGGAATCATCATCATCATCATGGCAATTAACAAAGTGTTTTCACCATAATAGTGGAAGAGATCTTGCGATTGGAAATAGTGCACAAGAATGGAACAACGTTGACTTTTCCGATCTCTGCATAGGGCACAAATTTTCCCATGGTGCCCATAGTCAAATCTACCATGGCATATACAAAAATGATCGTGTTGCTGTCAAATTCGTCAAAGTACAAGATAACGATGAAAAGTGTATCCCAAAATCCCTTTTGGAAACACAATTTTCAAGAGAAGCAACGCATCTATCTCGTCTCTGCCACCAAAACGTCGTGAAGTTCGTAGGCGCGTACAAAGACACGGATTTATGTTGCATTCTCACGGAGTATCAACAAGAGGGGTCCCTAAGGGTGTTTTTGAACAAGGTGGAGTCAAAGCCAATTTCTCTTAATACGGTTATAGCTTTTGCATTGGACATTGCACGTGGAATGGAGTATACACATGCAAAAGGGATCATTCATAGAGACCTAAAACCGGAGAATGTTCTTGTTGATGGCGAAACTCACCTCAAGATTGCTGATTTTGGCATTGCTTGTGATGAGGCTTCAAAGTATGACTCATTGAGAGGTACCTATCGTTGGATGGCACCAGAGATGGTTAAAGGAAAACGCTATGGGAGAAAGGTTGATGTGTATAGTTTTGGTCTTATTTTGTGGGAATTGGTGAGTGGAAAATTGCCATTTGAGGGCATGAGTGCTGTTCAGGTTGCTGTTGCTGTGGCTGATAGGGATTCTAGACCTGTTGTTCCTTCAAATTGCCCTCATGTTTTGGGTGATTTGATGAAGCAATGTTGGGCCTGGAAGCCCGAGAAGAGGCCCGAGTTTGAGCAGATTGTTCAAGTTTTGGAGCAGTTAGAACAAGGTCGCGACTTCACGCATTCCAAGAAACTCATGCAACATCCCGTTTCATAA 993 0.426 MGKLSIMLYDRCRNRNKESSSSSWQLTKCFHHNSGRDLAIGNSAQEWNNVDFSDLCIGHKFSHGAHSQIYHGIYKNDRVAVKFVKVQDNDEKCIPKSLLETQFSREATHLSRLCHQNVVKFVGAYKDTDLCCILTEYQQEGSLRVFLNKVESKPISLNTVIAFALDIARGMEYTHAKGIIHRDLKPENVLVDGETHLKIADFGIACDEASKYDSLRGTYRWMAPEMVKGKRYGRKVDVYSFGLILWELVSGKLPFEGMSAVQVAVAVADRDSRPVVPSNCPHVLGDLMKQCWAWKPEKRPEFEQIVQVLEQLEQGRDFTHSKKLMQHPVS 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0117 330 PRINTS Tyrosine kinase catalytic domain signature 236 258 IPR001245 GO:0004672|GO:0006468
Aed1g0117 330 PRINTS Tyrosine kinase catalytic domain signature 217 227 IPR001245 GO:0004672|GO:0006468
Aed1g0117 330 PRINTS Tyrosine kinase catalytic domain signature 135 148 IPR001245 GO:0004672|GO:0006468
Aed1g0117 330 PRINTS Tyrosine kinase catalytic domain signature 280 302 IPR001245 GO:0004672|GO:0006468
Aed1g0117 330 PRINTS Tyrosine kinase catalytic domain signature 173 191 IPR001245 GO:0004672|GO:0006468
Aed1g0117 330 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Aed1g0117 330 Pfam Protein tyrosine and serine/threonine kinase 57 309 IPR001245 GO:0004672|GO:0006468
Aed1g0117 330 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 14 314 - -
Aed1g0117 330 PIRSF ILK 35 327 - -
Aed1g0117 330 SMART serkin_6 55 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g0117 330 Gene3D Phosphorylase Kinase; domain 1 43 139 - -
Aed1g0117 330 ProSiteProfiles Protein kinase domain profile. 55 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g0117 330 Gene3D Transferase(Phosphotransferase) domain 1 140 329 - -
Aed1g0117 330 SUPERFAMILY Protein kinase-like (PK-like) 41 309 IPR011009 -
Aed1g0117 330 CDD STKc_MAP3K-like 63 309 - -
Aed1g0117 330 PANTHER SERINE-THREONINE PROTEIN KINASE 14 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0117 Aed-Chr1 2364469 2365461 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0117 11 312 MAP Kinase Kinase Kinase AT5G58950 53.268 1.97e-110 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Aed1g0117 PK_Tyr_Ser-Thr 8.2e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0117 - - gmx:100782673 492.656