Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0112 ATGGCTTCTCTTCACTCTTCTCTGCTCTTGCCACCGAATCTCCTCTCCCTCACAACAACCCCGTCAAGTTCCTCCACTCATATTCTCTTGAGACCCTCCGCCGCGACCCACCTGCGACGACCCCTTTTAGCCACGCGCCGCCGTTTCGGGAGCAGACCACCCTTTGCGGTTGCTGAACAGGCCACCGTGATGGCCGAGGCCGCCGCAAGGAGGCTCTATGTTGGCAACATTCCCCGCACTGTCACCAACGACGAGCTCGCCAAGCTTGTTCAGGAGCATGGCGCTGTTGAGAAAGCTGAGGTTATGTACGATAAATACTCTGGAAGGAGCCGTCGCTTTGCATTTGTTACGATGAAAACTGTTGATGATGCAACTGCTGTGGTGGAGAAACTTAACGGCACTGAAATTGGAGGGCGTGAGATCAAAGTAAATGTAACTGAAAAACCTTTGTCGACGCCAGATTCACCTTTACTCCAAGCTGAGGAATCTCAATTTGTCGACAGTCCCCACAAGGTGTATGTGGGAAATCTGGCCAAGACAGTAACAACTGATACTCTTAAAAGCTTTTTTTCTGAGAAGGGAAAAGTTCTCAGTGCCAAGGTTTCACGGGTCCCTGGTACATCGAAATCCAGTGGGTATGGTTTTGTTACTTTTTCATCAGAAGAGGATGTAGAAGCTGCAATCTCATCTTTCAACAATTCTTTGTTAGAAGGGCAAACAATCCGTGTGAACAAGGCAGCATAG 744 0.4933 MASLHSSLLLPPNLLSLTTTPSSSSTHILLRPSAATHLRRPLLATRRRFGSRPPFAVAEQATVMAEAAARRLYVGNIPRTVTNDELAKLVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDATAVVEKLNGTEIGGREIKVNVTEKPLSTPDSPLLQAEESQFVDSPHKVYVGNLAKTVTTDTLKSFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEDVEAAISSFNNSLLEGQTIRVNKAA 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0112 247 SUPERFAMILY RNA-binding domain, RBD 68 149 IPR035979 GO:0003676
Aed1g0112 247 Gene3D - 57 157 IPR012677 -
Aed1g0112 247 SUPERFAMILY RNA-binding domain, RBD 165 246 IPR035979 GO:0003676
Aed1g0112 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 142 IPR000504 GO:0003723
Aed1g0112 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 172 242 IPR000504 GO:0003723
Aed1g0112 247 PANTHER 30S RIBOSOMAL PROTEIN 2, CHLOROPLASTIC 1 246 - -
Aed1g0112 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 148 IPR000504 GO:0003723
Aed1g0112 247 PANTHER OS02G0815200 PROTEIN 1 246 - -
Aed1g0112 247 SMART rrm1_1 171 244 IPR000504 GO:0003723
Aed1g0112 247 SMART rrm1_1 71 144 IPR000504 GO:0003723
Aed1g0112 247 SMART rrm2_1 71 144 IPR003954 GO:0003676
Aed1g0112 247 SMART rrm2_1 171 244 IPR003954 GO:0003676
Aed1g0112 247 Gene3D - 158 247 IPR012677 -
Aed1g0112 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 170 247 IPR000504 GO:0003723
Aed1g0112 247 CDD RRM_HP0827_like 71 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0112 Aed-Chr1 2328057 2331687 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0112 72 243 Eukaryotic Initiation Factors Gene Family AT1G22760 28.488 1.17e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0112 K13126 - gmx:100811197 371.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0112 1 2328057 2331687 Aed1g0112 1 2328057 2331687 ECH