Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0110 ATGGTTCCATCATCACTTTGTGTTAATGGTTGTGGATTCTATGGTTGTGGTGCCAACAAGAACTTTTGTTCAAAGTGTTACAAAGATTATCTCGAAGAAAACGTCATCACCAAATCAAATGAGTGTGATGAAACCAAGAACAACTTGAATGACAAAGTTTTTGTTATTGATCAGTCATCTACACGTGCCTTTGATTCTGAAGGTGGTTCTATCACTGATGCTATGATTGTTGCTCTCAACAATACCAACAAGAGAAAGAGGTGCAAAAGCTGCAACAAAAAGGTTGGACTTTTAGGATTCAAATGTCATTGTGGGGATGTGTTTTGTGGAACACATAGATATCCTGAGAAGCATACATGCAATGTAGATTTTAAGGAAATTGGTCGTCAATATTTGACTTAA 402 0.3657 MVPSSLCVNGCGFYGCGANKNFCSKCYKDYLEENVITKSNECDETKNNLNDKVFVIDQSSTRAFDSEGGSITDAMIVALNNTNKRKRCKSCNKKVGLLGFKCHCGDVFCGTHRYPEKHTCNVDFKEIGRQYLT 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0110 133 SUPERFAMILY AN1-like Zinc finger 80 132 IPR035896 -
Aed1g0110 133 PANTHER AN1-TYPE ZINC FINGER PROTEIN 5 132 - -
Aed1g0110 133 SMART AN1_Zf_4 88 125 IPR000058 GO:0008270
Aed1g0110 133 ProSiteProfiles Zinc finger A20-type profile. 1 35 IPR002653 GO:0003677|GO:0008270
Aed1g0110 133 Pfam AN1-like Zinc finger 88 123 IPR000058 GO:0008270
Aed1g0110 133 Pfam A20-like zinc finger 5 28 IPR002653 GO:0003677|GO:0008270
Aed1g0110 133 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 35 - -
Aed1g0110 133 SMART A20_3 4 28 IPR002653 GO:0003677|GO:0008270
Aed1g0110 133 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 8-RELATED 5 132 - -
Aed1g0110 133 Gene3D - 3 50 - -
Aed1g0110 133 ProSiteProfiles Zinc finger AN1-type profile. 82 128 IPR000058 GO:0008270
Aed1g0110 133 Gene3D - 71 133 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0110 Aed-Chr1 2310433 2310834 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0110 6 133 C2H2 Transcription Factor Family AT3G52800 33.099 1.94e-23 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0110 - - gmx:102663114 174.096