Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0100 ATGGTTCGTTCCAATGGCGTTAGACTCCTTCGATCGCTGCCCGAAAAACTCCTCCGCCACGCCAACGAACCCGTATATGAAGGAGTGTGCCAGAGGGGTTATAGGACATTGAGTTCAGGACTTTGTAATCCATCCAGAGTTATTGGGAATTTTTTTCCAAATGTTGGAAATGGTGTTAATTTGAAGAACTGGTTGCTGTTTGGAACTGCAAATACCTATTGGGGAACATCTAGATTCATTCATGGGTCAGCATCGTTGGCAAGAGACTATTACAACGTGCTTGGTGTGAATAAGAATGCGAGTTCTTCTGAAATAAAGAAAGCATACTATGGGCTTGCAAAGAAGCTCCATCCGGACACAAACAAAGATGATCCCGAGGCTGAGAAGAAGTTTCAAGAAGTTTCAATTGCATATGAGGTTTTGAAGGATGAGGAAAAACGTCAACAGTATGATCAGATTGGGCATGATGGATATGTAAACCAAGAAAGCACTGGTGGTTTTGGAGGCAACAGTGGCTTTAATCCATTTGAGCAGATGTTCCGTGATCAGCTGTCCGGGGATGCAACAAAACTATTACGTTTCAAACAGAAGTGGTTTGTAACACTTGTGGCGGGAGTGGTGTTCCTCCTGGTACAAGACCTGAAACCTGTAAGCGCTGTAAAGGGGATTGACAACAATGAAACTATAAAGGTTTATAGAAGTGGTGGTGCAGATCCTGATGGAGATAACCCCGGTGATCTTTATGTTACTATCAAGGTCAGGGAAGATCCTGTCTTCCGTAGAGAGGGATCTGATATTCATGTAGATGCTGGCTTAAGTATCACTCAGGCAATTTTGGGTGGAACCATTCAGGTCCCAACTCTTACTGGAGATGTTGTTCTTAAGGTTCGTCCTGGCACTCAACCTGGTCAGAAGGTGGTTCTGAAAAAGAAAGGGATCAAGACAAAAAATTCTTACACATTTGGGGATCAATTTGTTCATTTTAACGTCAGCATTCCAAACAATCTGACAGAGAGACAGCGAGAGTTGATTGAAGAGTTTGGCAAGGAAGAGCAAGGAGATTTTGATAAAGAGAGAGTTGCATCTGCTTCTGGTTGA 1098 0.4308 MVRSNGVRLLRSLPEKLLRHANEPVYEGVCQRGYRTLSSGLCNPSRVIGNFFPNVGNGVNLKNWLLFGTANTYWGTSRFIHGSASLARDYYNVLGVNKNASSSEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSIAYEVLKDEEKRQQYDQIGHDGYVNQESTGGFGGNSGFNPFEQMFRDQLSGDATKLLRFKQKWFVTLVAGVVFLLVQDLKPVSAVKGIDNNETIKVYRSGGADPDGDNPGDLYVTIKVREDPVFRREGSDIHVDAGLSITQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKKKGIKTKNSYTFGDQFVHFNVSIPNNLTERQRELIEEFGKEEQGDFDKERVASASG 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0100 365 ProSiteProfiles dnaJ domain profile. 89 154 IPR001623 -
Aed1g0100 365 PRINTS DnaJ domain signature 126 146 IPR001623 -
Aed1g0100 365 PRINTS DnaJ domain signature 146 165 IPR001623 -
Aed1g0100 365 PRINTS DnaJ domain signature 91 109 IPR001623 -
Aed1g0100 365 PRINTS DnaJ domain signature 109 124 IPR001623 -
Aed1g0100 365 Gene3D - 254 361 - -
Aed1g0100 365 SMART dnaj_3 88 146 IPR001623 -
Aed1g0100 365 ProSitePatterns Nt-dnaJ domain signature. 131 150 IPR018253 -
Aed1g0100 365 CDD DnaJ_C 221 336 - -
Aed1g0100 365 Pfam DnaJ domain 89 151 IPR001623 -
Aed1g0100 365 PANTHER DNAJ-CLASS MOLECULAR CHAPERONE 30 182 - -
Aed1g0100 365 Pfam DnaJ C terminal domain 216 333 IPR002939 -
Aed1g0100 365 CDD DnaJ 89 143 IPR001623 -
Aed1g0100 365 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 30 182 - -
Aed1g0100 365 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 220 365 - -
Aed1g0100 365 SUPERFAMILY Chaperone J-domain 88 183 IPR036869 -
Aed1g0100 365 SUPERFAMILY HSP40/DnaJ peptide-binding domain 258 344 IPR008971 GO:0006457|GO:0051082
Aed1g0100 365 Gene3D DnaJ domain 86 193 IPR036869 -
Aed1g0100 365 PANTHER DNAJ-CLASS MOLECULAR CHAPERONE 220 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0100 Aed-Chr1 2102974 2110311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0100 82 151 C2H2 Transcription Factor Family AT1G74250 41.333 1.29e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0100 K03686 - gmx:100815834 334.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0100 1 2102974 2110311 Aed1g0100 1 2102974 2110311 ECH