Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0095 ATGGCTACTACAATGGACCCCCTTGTGTCATCAAGGAACAACAACCTTGGACTTGAATCAGCCAAGATTTTTGAGTTACACAAAGTAATTGCAAAAGATAAGATGAGTGTTATGTACAGTCCTGTTCTAAAGTACTCAGATTATGTGGAGCATCATCACCAGCTAAGAAAAAGCCAAGAAATGGATTTAAGCATTGGAAATCCACAGCAACACTGTCACCAACCAAATTCAGGACTATTGAGGTATTGTTCTGCTCCAAGCTCATTGCTTGCAAGCCTTATTGAAGAACAACAGCCATTCACAACAAGTGAGAATCATTATCTTCCATCATCCACAACATGTTCAGAAATGGAGACCATGTTGTGCAAATTGCTACCATCATCATCATCCAACAACAATGGATGGAGTAGTAATTCAGAAGAAGAGGCTTTGCAAGAATTTGGAGGCAAGCCTGTGAAGCAGGAAACAGGGGACTCTGTTTCTGTTCCACAGCAACAGAATGGTGGTTATTCTTCTTCTTATGGTGGTGGTGGATCTCAGATAATATACCACCAATCTCAGGAAAATCATGGCTTGCCAAATGGTTCTTCCAGAAGTGCTTTTGATGATGTATCTTTTGGTGTGGTGGAATCCATGGCTTCTGAGAACTCCACTCAATCTAAAATTGATCTTGCAGCATTTAGAGAAGTAGGAAGCTTTAAAGCCAATGATGTTTCAAATGGACAAGCTACTGCATCAACTAGTGGATTGAATGGCACTCTTACTTTCTCATCTAGGCCATCTTCATGCTTGAAAAGGATGCCACAAATAGTTGAAAATGGAAATGAAAACATAGAAGAAAATTGTGACCAAAGTAGAAACCTAGTAAATGACAATGGTAGCTCAAAATGTTACATGCCTAGCTTCACCACTGAATTCTGGAACAGTTCTGCATTCAATGCCCCCAAAACAGAAAATGAAGATGAGATCATGTTTTCCAATTCAAATGGTTTGGATTTGGAATCTCAGGAAGCAGATTTCAGCTATCAAAATCATGGTTTGACTCACCATTTGAGTCTACCTAGCTCTTCTACTAAGATGTCATCATTTGAGAAGTTTCTTCAACAAACAAGCACAGCAGATATGTTAGATTTGGCAGTTGATTACATTAAGGACCTGCAGCAACAAGTTAAGATGCTCTCAGATTGCAAGGCAAAGTGCAAATGCACAAGTAATGAGAAGCAGTGCACTAGAACTTGTGCTTGA 1245 0.3952 MATTMDPLVSSRNNNLGLESAKIFELHKVIAKDKMSVMYSPVLKYSDYVEHHHQLRKSQEMDLSIGNPQQHCHQPNSGLLRYCSAPSSLLASLIEEQQPFTTSENHYLPSSTTCSEMETMLCKLLPSSSSNNNGWSSNSEEEALQEFGGKPVKQETGDSVSVPQQQNGGYSSSYGGGGSQIIYHQSQENHGLPNGSSRSAFDDVSFGVVESMASENSTQSKIDLAAFREVGSFKANDVSNGQATASTSGLNGTLTFSSRPSSCLKRMPQIVENGNENIEENCDQSRNLVNDNGSSKCYMPSFTTEFWNSSAFNAPKTENEDEIMFSNSNGLDLESQEADFSYQNHGLTHHLSLPSSSTKMSSFEKFLQQTSTADMLDLAVDYIKDLQQQVKMLSDCKAKCKCTSNEKQCTRTCA 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0095 414 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 369 406 - -
Aed1g0095 414 MobiDBLite consensus disorder prediction 131 181 - -
Aed1g0095 414 CDD bHLH_AtbHLH_like 366 394 IPR045239 -
Aed1g0095 414 MobiDBLite consensus disorder prediction 157 181 - -
Aed1g0095 414 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 68 369 - -
Aed1g0095 414 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 369 406 - -
Aed1g0095 414 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 68 369 - -
Aed1g0095 414 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 368 402 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0095 Aed-Chr1 2043026 2046848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0095 69 404 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 24.623 6.26e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0095 - - gmx:100812802 466.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0095 1 2043026 2046848 Aed1g0095 1 2043026 2046848 ECH