Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0094 ATGGAGAAGGGGGTGCCACCTAGCCTCTTCGTCAATGATGGTTCTTTCATGGAGAGGTTCAAGCAACTTCAACAAGAGCAGGAGAAAGGGAAGAATGGAAAATTAGGGGATTCTAAACCAATAAAGGTTATTTCAGGGTCTTTGTCTCCCAATCCCTCCATTACCAAAACGTCTGTGGACTTGAAGGTTAATGATACAAGGAAAACCCAGGGTGGCTCTGCTGGCAAGCTAGCTTTCAGTTTAAAACAAAAGTCAAAGTTGGTGCCACCCCCGGTTAAGTTGAGTGCCGATGAGGATGAAGAAGAAACAGAATCTGGGTATGTTTCAAATGATGCACCACTAAAACGGCAAAAGTTGGGCCAGGAGGACACCATGGACCAAACATCAAGACAACTTGATGTTGCCCCTCCTTCCCCAAGTGATCCTACAGTGAAGAAAGTTGCTGACAAGCTAGCAAGTTTTGTGGCTAAAAATGGAAGGCAATTTGAGGATGTTACACGTCAAAAAAATCCTGGGGATACACCTTTCAAGTTTTTATTTGATGAGAGATGTGCTGAATACAAGTATTATGAATATCAGCTTGCTCAAGAAGAAAAGGCTCTTGCGCAATCATGGGAATCACAGGTGCCTCATAATGGGGGTACAAACACTTCACCTTCCAAACAGACCAGTGGTCATCAAAGATCATCTCAGCAGCATTCATACCAAATTCCTGCATCTGCTTTATATGAAAGTGCCGACAATCCAAGAGCTTCTGGATTTTCAATACAAACAGTAGGAAGCAGTGAAGAACCCAGTGGTTCATCAAATGCTGATTCGCTGGCACTAATGGAGTTCTACATGAAGAAAGCTGCACGGGAAGAGAAGTATAAACAACCTAAGTACTCAAAAGATGAGATGCCCCCTCCTGCTTCTCTTCTAGGCAAAAAAGGCCATCATATGGGTGATTTCATTCCTCCAGAAGAACTTGAGAAGTTCATGGCTAGCTGTAATGATGTTGCAGCACAGAAAGCTGCAAAGGAGGCTGCAGAGAGGGCTAAGATTCAGGCTGATAATGTAGGCCACAGGCTCCTGTCAAAAATGGGTTGGAAAGAAGGTGAGGGTCTGGGTGGCTCAAGGAAGGGTATTGCGGATCCAATCATGGCAGGTAATATTAAGAAGAATAACTTGGGGGTTGGTGCTCAGGAACCTGGGGAGGTGTCTTCCGAGGATGACATATACGAGCAGTACAAAAAGAGGATGATGCTTGGCTACCGTTACAGACCCAATCCTCTGAACAATCCCCGCAAGGCATATTACTGA 1302 0.447 MEKGVPPSLFVNDGSFMERFKQLQQEQEKGKNGKLGDSKPIKVISGSLSPNPSITKTSVDLKVNDTRKTQGGSAGKLAFSLKQKSKLVPPPVKLSADEDEEETESGYVSNDAPLKRQKLGQEDTMDQTSRQLDVAPPSPSDPTVKKVADKLASFVAKNGRQFEDVTRQKNPGDTPFKFLFDERCAEYKYYEYQLAQEEKALAQSWESQVPHNGGTNTSPSKQTSGHQRSSQQHSYQIPASALYESADNPRASGFSIQTVGSSEEPSGSSNADSLALMEFYMKKAAREEKYKQPKYSKDEMPPPASLLGKKGHHMGDFIPPEELEKFMASCNDVAAQKAAKEAAERAKIQADNVGHRLLSKMGWKEGEGLGGSRKGIADPIMAGNIKKNNLGVGAQEPGEVSSEDDIYEQYKKRMMLGYRYRPNPLNNPRKAYY 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0094 433 MobiDBLite consensus disorder prediction 202 241 - -
Aed1g0094 433 Pfam Surp module 146 195 IPR000061 GO:0003723|GO:0006396
Aed1g0094 433 MobiDBLite consensus disorder prediction 202 270 - -
Aed1g0094 433 MobiDBLite consensus disorder prediction 44 73 - -
Aed1g0094 433 SUPERFAMILY Surp module (SWAP domain) 129 198 IPR035967 GO:0003723|GO:0006396
Aed1g0094 433 PANTHER ARGININE/SERINE RICH SPLICING FACTOR SF4/14 3 433 IPR040169 -
Aed1g0094 433 MobiDBLite consensus disorder prediction 23 147 - -
Aed1g0094 433 ProSiteProfiles G-patch domain profile. 350 397 IPR000467 GO:0003676
Aed1g0094 433 PANTHER SURP AND G PATCH DOMAIN-CONTAINING 1 3 433 - -
Aed1g0094 433 Pfam G-patch domain 351 394 IPR000467 GO:0003676
Aed1g0094 433 SMART surpneu2 145 199 IPR000061 GO:0003723|GO:0006396
Aed1g0094 433 MobiDBLite consensus disorder prediction 250 270 - -
Aed1g0094 433 ProSiteProfiles SURP motif repeat profile. 147 190 IPR000061 GO:0003723|GO:0006396
Aed1g0094 433 Gene3D Surp module 119 203 IPR035967 GO:0003723|GO:0006396
Aed1g0094 433 SMART G-patch_5 348 395 IPR000467 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0094 Aed-Chr1 2025199 2033968 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0094 339 407 C2H2 Transcription Factor Family AT5G26610 46.377 8.87e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0094 K13096 - gmx:100786213 794.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0094 1 2025199 2033968 Aed1g0094 1 2025199 2033968 ECH