Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0078 ATGTCTAAGAGGGTTCTTTGCAAGTTCTTTGCTCATGGAGCCTGTCTGAAAGGGGAGCATTGCGAATTTTCTCATGACTGGAAAGATCCTCCAAATAATATATGCACATTTTATCAGAAAGGAGTCTGTGCTTATGGTAGTCGCTGCAGATATGATCACGTCAGAGCTTCTCTAGAGCAATCTTCCTCTCCATCTTCTTCAGTAATTGAGCCCCAAACTGTGGTTTCAGATACCGTTGCTTTTGGAAATACTAGAACTACATCAAATGGTGTTGCTATATCTGCAGAGTTTTCTCCTTCTGGGAGTCCTTACCTTCTTCCAAGTGAACCGGCTTGGAATCAAGAACTGGTTTGGAATCAAGAATTCAGGTATCATGAACCACCTTTAGGGGAAGACAATGTTGGTCAATCCATGATCACTTCACCTTCTGAGCTTTCAATTTGTTCATTTGCTGCTGCTGGAAACTGTCCACGAGGGGACAAATGCCCTCATATTCACGGGGATCTATGTCCTATCTGCGGAAAGCATTGCTTGCATCCCTTCCGACTTGTGGAAAGAGAAGAACATTTGAAGAGTTGTGAGAATAAGCATAAGCAACTTGAGGCATTGAAACGGAGTCAAGAAATTGAATGCAGTGTTTGCCTGGAGCGTGTTCTGTCAAAGCCTACAGCAGCTGAACGTAAGTTTGGGCTGCTATCTGAGTGTGATCATCCTTTCTGCATATCCTGTATTAGGAATTGGCGTAGTAGTAATCCAACATTGGGGATGGATGTTAATAGCACATTGAGGGCATGTCCTATTTGTCGTAGGCTATCATACTTTGTCATTCCAAGTGTCATTTGGTACTCAACAACTGAAGAAAAACAAGAAATCATTGACAACTACAAGGCAAAACTCAAGTCAATTGATTGCAAGCACTTCGACTTTGGGGATGGGAACTGCCCTTTTGGAACTAGTTGTTTCTACAAGCATGCATATCGAGATGGCCGTCTGGAGCAGGTAGTTCTGCGACATCTAGGGGCCGCAGATGGTGATACCGTAATTGCAAAAGACATCAGGTTGTCAGATTTCCTTTCTAACATGCATTTAAGATGA 1095 0.4292 MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTFYQKGVCAYGSRCRYDHVRASLEQSSSPSSSVIEPQTVVSDTVAFGNTRTTSNGVAISAEFSPSGSPYLLPSEPAWNQELVWNQEFRYHEPPLGEDNVGQSMITSPSELSICSFAAAGNCPRGDKCPHIHGDLCPICGKHCLHPFRLVEREEHLKSCENKHKQLEALKRSQEIECSVCLERVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSNPTLGMDVNSTLRACPICRRLSYFVIPSVIWYSTTEEKQEIIDNYKAKLKSIDCKHFDFGDGNCPFGTSCFYKHAYRDGRLEQVVLRHLGAADGDTVIAKDIRLSDFLSNMHLR 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0078 364 CDD RING-HC_MKRN 211 269 - -
Aed1g0078 364 Gene3D - 33 170 - -
Aed1g0078 364 PANTHER MAKORIN-RELATED 1 364 IPR045072 -
Aed1g0078 364 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 69-LIKE 1 364 - -
Aed1g0078 364 Pfam Zinc finger, C3HC4 type (RING finger) 211 268 IPR018957 GO:0046872
Aed1g0078 364 SUPERFAMILY CCCH zinc finger 32 53 IPR036855 GO:0046872
Aed1g0078 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 303 IPR013083 -
Aed1g0078 364 Pfam RNA-binding, Nab2-type zinc finger 147 166 - -
Aed1g0078 364 Pfam RNA-binding, Nab2-type zinc finger 303 325 - -
Aed1g0078 364 SUPERFAMILY CCCH zinc finger 3 26 IPR036855 GO:0046872
Aed1g0078 364 ProSiteProfiles Zinc finger C3H1-type profile. 29 56 IPR000571 GO:0046872
Aed1g0078 364 SMART c3hfinal6 1 27 IPR000571 GO:0046872
Aed1g0078 364 SMART c3hfinal6 298 326 IPR000571 GO:0046872
Aed1g0078 364 SMART c3hfinal6 30 55 IPR000571 GO:0046872
Aed1g0078 364 SMART c3hfinal6 143 168 IPR000571 GO:0046872
Aed1g0078 364 Gene3D - 1 32 - -
Aed1g0078 364 SMART ring_2 211 268 IPR001841 -
Aed1g0078 364 Coils Coil 183 210 - -
Aed1g0078 364 ProSitePatterns Zinc finger RING-type signature. 235 244 IPR017907 -
Aed1g0078 364 ProSiteProfiles Zinc finger RING-type profile. 211 269 IPR001841 -
Aed1g0078 364 Pfam CCCH-type zinc finger 34 53 IPR041367 -
Aed1g0078 364 Pfam CCCH-type zinc finger 6 26 IPR041367 -
Aed1g0078 364 SUPERFAMILY RING/U-box 202 275 - -
Aed1g0078 364 ProSiteProfiles Zinc finger C3H1-type profile. 298 327 IPR000571 GO:0046872
Aed1g0078 364 ProSiteProfiles Zinc finger C3H1-type profile. 1 28 IPR000571 GO:0046872
Aed1g0078 364 ProSiteProfiles Zinc finger C3H1-type profile. 142 169 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0078 Aed-Chr1 1796637 1803979 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed1g0078 zf-C3HC4 3e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0078 K15687 - gmx:100787817 702.59