Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0077 ATGTCCAACAGGGTTTGCAAGTTCTATGCCCGTGGAGCATGTTTGAAAGGGGATCAATGTGATTTTTCTCATGAGAAAAAGGATGATATTTGCAGCTATTATCAAAAAGGATTCTGTGCTTATGGCAGTAGATGCAGATATAAGCATGTCAAAACTTCTCAACCGTCGTCTAATGGACGCCATGCTCCTGTTCCGGATTCTGCGCTGAATCATCATACCGCTTATGGATTGCCAAGTTGGGTTCCGAAGGCAGCTGTGAAGGCATCTTCGTCGAACAATTGTGCAAGGAGTTCACAACAAAAGAATTTCGCCTCTCTTGGAAACGATGTCGGGCAATCCAGTACCAGTAGTGCTATACTACCGACTGAACATTTGTTTTGTGCTTTTGCTGCTGCCAACTGTCCCCTTGAGGATAAATGTTCCCGCATTCATGGAAACCAATGCTTGTACTGTCGAAAGTTTTGCTTACATCCTACTGATCGGAAGGAAAAGGAAAACCATTTGAGGACTTGCGAGAAAAAGGAAAAATACCTTCTGGCTTTGAAAGATAGTCAAGAAGTGGAATGCAATGTTTGTTTGGAGCGTGTTCTGTCCAAACCTAAAGCATCTGATTGTAAGTTCGGGCTGCTTCCGGAATGCGACCACGCTTTCTGTTTATCCTGTATCCGCAATTGGCGTAACAGCACCCTGACCTCTGGAATGGACATGAATAATGCCAGCAATGCTAATACAGTCAGAACCTGTCCCGTTTGTCGCAAACTATCGTATTTTGTCATTCCAAGTGGTATTTGGTATTCTACCAAGGAAGAAAAACAGGAAATTATTGACAACTACAAGGCAAACTGCAAACTAATTGATTGCAAGCATTTTAACTTTGGAAATGGGAATTGTCCATTCGGGGCTAGTTGCTTCTACAAGCACACAGTGAAGCCCGGATCTTACACATGGATACATCACAGGCCACCGCCTCAACGGAGACCAAACCATTTTGATATGTATGAAATGTTGGACATGCTCCAAGAAGTTGATCTAACAAGTGCGGAATATTTTTCCATCATGAGGGACACAATTTTTTTTGATGATATGGATCCATTCGAGATGATGGATATATCCAATAGACTCACTGGTGACTCGGGTCCTTGTTTGGGTCCTTTTGATTCTGACGAGGAGGACTTGGATATTTTCCAGATGGCTGCATTGTCGGAAGCACTGGCTGCTGGTGTTGATGATTTTGGCCTTGACGATTTTGGTGACGAAGATTTCGATCCTATGGAGGCCGCCTTTTTATCAATGATGATGCATTCAAATATGGAAGATGAAGATGATGACAATGATGAAGAAGTAGAAGAATACAGTGATGAAGACTACTAG 1371 0.4274 MSNRVCKFYARGACLKGDQCDFSHEKKDDICSYYQKGFCAYGSRCRYKHVKTSQPSSNGRHAPVPDSALNHHTAYGLPSWVPKAAVKASSSNNCARSSQQKNFASLGNDVGQSSTSSAILPTEHLFCAFAAANCPLEDKCSRIHGNQCLYCRKFCLHPTDRKEKENHLRTCEKKEKYLLALKDSQEVECNVCLERVLSKPKASDCKFGLLPECDHAFCLSCIRNWRNSTLTSGMDMNNASNANTVRTCPVCRKLSYFVIPSGIWYSTKEEKQEIIDNYKANCKLIDCKHFNFGNGNCPFGASCFYKHTVKPGSYTWIHHRPPPQRRPNHFDMYEMLDMLQEVDLTSAEYFSIMRDTIFFDDMDPFEMMDISNRLTGDSGPCLGPFDSDEEDLDIFQMAALSEALAAGVDDFGLDDFGDEDFDPMEAAFLSMMMHSNMEDEDDDNDEEVEEYSDEDY 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0077 456 PANTHER MAKORIN-RELATED 1 456 IPR045072 -
Aed1g0077 456 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 27 50 IPR000571 GO:0046872
Aed1g0077 456 SUPERFAMILY CCCH zinc finger 3 25 IPR036855 GO:0046872
Aed1g0077 456 SMART ring_2 189 251 IPR001841 -
Aed1g0077 456 ProSiteProfiles Zinc finger RING-type profile. 189 252 IPR001841 -
Aed1g0077 456 Gene3D - 28 102 - -
Aed1g0077 456 MobiDBLite consensus disorder prediction 436 456 - -
Aed1g0077 456 ProSiteProfiles Zinc finger C3H1-type profile. 281 310 IPR000571 GO:0046872
Aed1g0077 456 SUPERFAMILY CCCH zinc finger 24 49 IPR036855 GO:0046872
Aed1g0077 456 CDD RING-HC_MKRN 189 252 - -
Aed1g0077 456 Pfam Zinc finger, C3HC4 type (RING finger) 189 251 IPR018957 GO:0046872
Aed1g0077 456 ProSitePatterns Zinc finger RING-type signature. 213 222 IPR017907 -
Aed1g0077 456 Gene3D - 1 27 - -
Aed1g0077 456 Pfam RNA-binding, Nab2-type zinc finger 286 307 - -
Aed1g0077 456 Pfam RNA-binding, Nab2-type zinc finger 6 24 - -
Aed1g0077 456 SMART c3hfinal6 27 51 IPR000571 GO:0046872
Aed1g0077 456 SMART c3hfinal6 122 146 IPR000571 GO:0046872
Aed1g0077 456 SMART c3hfinal6 281 309 IPR000571 GO:0046872
Aed1g0077 456 SMART c3hfinal6 2 26 IPR000571 GO:0046872
Aed1g0077 456 ProSiteProfiles Zinc finger C3H1-type profile. 25 52 IPR000571 GO:0046872
Aed1g0077 456 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 179 263 IPR013083 -
Aed1g0077 456 PANTHER MAKORIN RING-ZINC-FINGER PROTEIN 1 456 - -
Aed1g0077 456 MobiDBLite consensus disorder prediction 438 456 - -
Aed1g0077 456 ProSiteProfiles Zinc finger C3H1-type profile. 1 24 IPR000571 GO:0046872
Aed1g0077 456 SUPERFAMILY RING/U-box 180 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0077 Aed-Chr1 1774141 1778574 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed1g0077 zf-C3HC4 1.4e-06 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0077 K15687 - gmx:100788886 771.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0077 1 1774141 1778574 Aed1g0077 1 1774141 1778574 ECH