Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0074 ATGACTTATCAAGTCATCAATTCTATCCTTTGGTGCTTTGTTTTAGCTGTTATGAGTGCCACCATTTTCACTCCAAAATTTAGTTTTGCCCGCAAAGAATCCAAGATAGAAGGCTTGGAAATGAATGAAATCGATCAATGTTGGAGATTCAATCCTGAATGGAGGAAAAATCGTTCACAACTTGCCAAATGTTCAGTGGGCTATACAGGGAAGATGACAAACAACATTGGCAAGGACCTCATTCATTACGAAGTTATTGATCCCAATGACGACCCAATAAATCCCAAATATGGCACCTTAAGATATGGAGCTTCTAGGATTCAAGACAAAGCAACCAACATAATCATCCATGGCCTTAGAATTCATCATTGTCAACCTCAAGCTCCTGGAATGGTAATGGGTCCTAATGGAAAGGTAATGCCTTTAGGTCAAGTTGATGGGGATGCAATAAGATTAGTTACAGCTTCAAAGATTTGGATTGATCACAACACACTTTATGATTGCCAAGATGGTCTTCTTGACATCACACGTGGTTCCACTAATGTGACTCTCTCAAACAATTGGTTTAGGGAGCAAAACAAGGTTATGCTTCTTGGGCATAATGATGGGTATTTGAGAGACAAGAACATGAAAGTTACGGTTGTGTATAATTATTTTGGACCTAATTGTCATCAACGCATGCCAAGAATTCGCCATGGGTATGCACATGTTGCAAACAATCTTTACATGGGATGGGTGCAATATGCCATAGGTGGAAGCAAGGAACCTAGCCTTAAAAGTGAATCAAACCTCTTCATAGCACCAACATCTGGGCGTAAGGAGGTAACATGGAGAAAAAATAGTAATGGTACTGGAGACTCATGGGAATTTCATTCAGTGGGAGATGCTTTTGAAAACGGAGCTTCTTTCATGGAAACACAAGGTGGACAAGTGCCAAAGCCAAATTATAACCCTAACCAAAGTTTTAAAGTTGCGATGTCTAATATGTTAGATCGTTGA 999 0.3964 MTYQVINSILWCFVLAVMSATIFTPKFSFARKESKIEGLEMNEIDQCWRFNPEWRKNRSQLAKCSVGYTGKMTNNIGKDLIHYEVIDPNDDPINPKYGTLRYGASRIQDKATNIIIHGLRIHHCQPQAPGMVMGPNGKVMPLGQVDGDAIRLVTASKIWIDHNTLYDCQDGLLDITRGSTNVTLSNNWFREQNKVMLLGHNDGYLRDKNMKVTVVYNYFGPNCHQRMPRIRHGYAHVANNLYMGWVQYAIGGSKEPSLKSESNLFIAPTSGRKEVTWRKNSNGTGDSWEFHSVGDAFENGASFMETQGGQVPKPNYNPNQSFKVAMSNMLDR 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0074 332 Pfam Pectate lyase 105 265 IPR002022 -
Aed1g0074 332 Gene3D - 41 106 IPR012334 -
Aed1g0074 332 Gene3D - 107 332 IPR012334 -
Aed1g0074 332 SMART amb_all 75 271 IPR002022 -
Aed1g0074 332 PANTHER PECTATE LYASE 110 326 - -
Aed1g0074 332 PANTHER PECTATE LYASE 3 109 - -
Aed1g0074 332 PANTHER PECTATE LYASE 18-RELATED 110 326 IPR045032 GO:0030570
Aed1g0074 332 PANTHER PECTATE LYASE 18-RELATED 3 109 IPR045032 GO:0030570
Aed1g0074 332 SUPERFAMILY Pectin lyase-like 27 324 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0074 Aed-Chr1 1717702 1719365 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0074 72 275 Polysaccharide Lyase AT5G09280 57.661 6.03e-103 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0074 K01728 - gmx:100811216 600.512