Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0066 ATGGAGCAAACAGCGTGCGAGGAATTGCCGAAAAGTGCTTCGGATTTCAAGTGCGAGAAGGTTCTCGAAACAGTTGATGAATCAATCGTATGCCCCACTCCACAAAAGAACGCGGAACCCTTAACCGTCAAATCCAGAGAGGGACAAACCAATCTTCCTGAAAAATACTCTACACTTGCATATTTGTTTGGTCACGTGAGTTGTTCACTTAGATTACTGCATCTGTGTAAAAAGCCTCAAAATTTTCAAAATGTATGCCGCCAGGTTGAAGTTCTTTCAAAGAGGAAACTCTCCCATGCCCATGTTGCGCAGATGAAGTATATACTCCCTGAAAGTGTGTGTATAGATAAGGTGCTTGTTCATGATAAGAAAAGCTTGTGTATGGTGCCCGATATGAAGATCACCTTGAAATTTGAGGTTGTGAAAGATTGCTCTGGTGAATCGGCTGATCTGGCTCTCTGGAGATATTTTAAATCTAAGCTGATTGATTTCTTTGATATGCATCCTGAGGTTGCTGACATTCCAGAGGCCCCACTGCCTGAACCCTCTGGCAAACAAACTTGTAGATTGAATTGTGAAGATTCACATATTGAAGAATTTACTGGCCAATCCCTGCATGTAAATTCTTCAACGGAAGTTTTGTCAATTTCCAATCAAACCAAAATGTTGCCAGAGCAATTGCAATTGTATCCAACTAGACACTTTTCTCGGAAGAATAATACCAACCAGGCAGAAAAGGCTCAATGCTTTTCACCCACAAAAACTTCTCCATCATTTCATGCATCTGATTGTTTGGATAATGAAGAAAGTGAAAAAGCACAGCTGAAAGAATGTGTACCATTATCTGATGATTTGGCTAATCCGACTGATGATTTGGCTAATCCGATTATGGAAAGAGGGAATCAGAAGGAATCATTTTCTTTGTCTTTTCAACCTAGTGTTATTAATACACCAGTACATATGATCCGCCCTCCACATTCTGTTACGTGCACTAATTTTGAAAGCCCAGATATGAAAAATATCTCCTGTGCTGCTGATAGTTTTATTACAGAGACACCTGCCCAGTCAGCACCTGCGAGATTATTGCCCATTTCTGATGTTAAGCTTCAGAACATGCCTACCCAAAAGTCAACATCTTCTCAAAAGGCAGCGAAAAGAGTGCTTGACTTTTCACTCATGGAGGACAATGATGGCTTGGGCATTGGAGTAGACATGTTAGAATCTAGCAGTGCTCTGCATGAATTTGATAGCTTCCCTGAATCTAGCAGAGGATGTTGTGAGGATTGCAATGCTTTTGGGTCTGTTTCTGTACCTATGGAGGCAGAAGAGAGCCTCAGTTATGCTTTTGAGAAAATTATCCAAAAGCAAGCTGGTTTAGAGACACAACATAAAAAATCTTCACCATTGGTGGATCTGGTTAATGTGATTCACTCTATATTTCAATCTGTCCAAAGAATTCCAATCACAAAAGAGGAGCTCCTGCATAAGATACTTATGAACAGTTTGGATTTTGTGGAGATGAGAGAAGCTGAAGAACAAATTGAGTCTCTGGAAAAGTTGGTGCCAGACTGGATCTGCAAGAAATTGGTTCCTACTGGAGATACTGTGTACTGCATCAATAAAGTGTCAGATTTGGACTCAGTACGATCAAGGCTTTCCAGCAACGAGACTGTTTGA 1677 0.4073 MEQTACEELPKSASDFKCEKVLETVDESIVCPTPQKNAEPLTVKSREGQTNLPEKYSTLAYLFGHVSCSLRLLHLCKKPQNFQNVCRQVEVLSKRKLSHAHVAQMKYILPESVCIDKVLVHDKKSLCMVPDMKITLKFEVVKDCSGESADLALWRYFKSKLIDFFDMHPEVADIPEAPLPEPSGKQTCRLNCEDSHIEEFTGQSLHVNSSTEVLSISNQTKMLPEQLQLYPTRHFSRKNNTNQAEKAQCFSPTKTSPSFHASDCLDNEESEKAQLKECVPLSDDLANPTDDLANPIMERGNQKESFSLSFQPSVINTPVHMIRPPHSVTCTNFESPDMKNISCAADSFITETPAQSAPARLLPISDVKLQNMPTQKSTSSQKAAKRVLDFSLMEDNDGLGIGVDMLESSSALHEFDSFPESSRGCCEDCNAFGSVSVPMEAEESLSYAFEKIIQKQAGLETQHKKSSPLVDLVNVIHSIFQSVQRIPITKEELLHKILMNSLDFVEMREAEEQIESLEKLVPDWICKKLVPTGDTVYCINKVSDLDSVRSRLSSNETV 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0066 558 Pfam DNA replication factor Cdt1 C-terminal domain 455 525 IPR032054 -
Aed1g0066 558 Pfam DNA replication factor CDT1 like 52 115 IPR014939 -
Aed1g0066 558 CDD Cdt1_m 34 187 IPR014939 -
Aed1g0066 558 SUPERFAMILY "Winged helix" DNA-binding domain 44 182 IPR036390 -
Aed1g0066 558 PANTHER DNA REPLICATION FACTOR CDT1 5 554 IPR045173 GO:0003677|GO:0030174|GO:0071163
Aed1g0066 558 Gene3D - 457 557 IPR038090 -
Aed1g0066 558 PANTHER EXPRESSED PROTEIN 5 554 - -
Aed1g0066 558 Coils Coil 507 527 - -
Aed1g0066 558 SMART CDT1_2 52 181 IPR014939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0066 Aed-Chr1 1514637 1517403 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0066 469 552 Core DNA Replication Machinery Family AT2G31270 45.238 6.34e-17 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0066 K10727 - gmx:102670055 936.406