Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0036 ATGGAGATGGAAGCTCTGAATCTCGCTTTCGCCGAATCTCGTTCTCTGCTTCAGATTCAGTGTTCGGATTTCGCTATTCTCCCTAACAGAAGCATGTGCAGTGGTCCAGAGAAATCAAAATCTCTTTCAACATCTTCATCAGCAGTAGAGGGTTCAACTACTAACACCAAAGACATGAAAAATTTAACAGTTCATACTGAAGATTCTTTTTCCTGCTTACTTGAGCTTGCTTCTAACAATGATTTTGAAGATTTTAAGGTAGCTTTAGGTAGGGATGTTTCTCTAATAAACAAAGTTGGCCTCTGGTATGTGCGCCAGATTGGATCCAAACAAATTGTTCTTGAGCACCGAACTCCTTTAATGGTTGCTGCTATGTATGGGAGTATAGATGTTCTCAAACTTGCACTCTCATGTCCGGAGGCTGATGTCAATTTCTCTTGCGGGTCAGATCAAAGCACCCCCCTTCACTGTGCTTCATCTGGTGGTTCTGTTAATGCAGTTGATGTTGTCAAGTTGCTCTTATCGGCTGGTGCTGATATCAGTTGTGTTGATGCTAATGGAAATCGCCCTGTTGATGTTATTGTTGTTCCTCCTAAGCTCGAAGGTCTGAAAGCAACTCTCGAAGATCTACTTTCAGACTCTGCTTCTGATGGGTCTGTTGTTGGTGACTGTTGTTTTATCCCAGTATCAGTTAACTCATCATGTTCTGATTCAGCTGCTCATTTATCATCACCTGAAAACGGGTTGCCATCCTCTCCCATGGCATCAAAGTTTACTGATACAGCTGTTAATTGTGCTTCTGAGAAGAAAGAATATCCAATCGATCCATCACTTCCTGATATAAAGAACAGCATTTATGCAACGGATGAGTTTCGCATGTTTTCATTCAAGGTGCGACCTTGTTCCCGGGCATACTCTCATGATTGGACCGAGTGTCCTTTTGTTCATCCTGGAGAGAACGCTCGTAGGAGAGACCCCAGAAAGTTTCATTACAGCTGCGTGCCGTGCCCTGATTTTAGAAAGGGGGCTTGTAGGCGCGGGGACATGTGTGAATATGCTCATGGAGTGTTTGAGTGCTGGCTTCACCCGGCTCAATATCGGACAAGGCTGTGCAAAGATGGTACTAGCTGCAACAGAAGGGTATGTTTTTTTGCTCACACAGCAGAAGAGCTGCGTCCATTATACATGTCCACTGGATCTGCTGTTCCCTCACCTCGCTCGTCTGCCTCTACTCCGAATGTCATGGACATGGCTGCTGCAATGAGCCTCTTTCCTGGTTCACCATCGTCGATTTCTTCCATGTCTGCATCTCCCTTTGCACAGCCAATGTCTCCATCATCTACAAGTGGCATTTCTCACTCGTCTAATGCTTGGCCGCAGCCGAATGTTCCAGCTCTTCATTTACCAGGAAGCATTAATATTCAAACCAGCCGATTGAGATCTTCTCTCAATGCTCGTGACATGCACCCTGAAGACTTGGATCACATGTTGCAAGATTTGGATGCCCAGCAGCAACACCTTTTGAATGACTTGGGCTGTTTCTCACAGCCCCGTCCCAGTGCCATTTCAGTGAGTCGATCTGGTCGGTCCAAGACACTAACTCCATCAAATCTTGATGATCTATTTTCTGCTGAGATTTCTTCATCTCCTCGGTATTCTGACCCAACAGCAGCAGCTTCTGTATTTTCCCCAACTCACAAATCGGCTATTATGATGAATCAGTTTCAACAGCTTCAAAGCTCGTTATCACCCATAAATACAAGTGCCTCGTCTCCTAGGAACGGCAAGCATCCTCTATTACAGGCTTCATTTGGTGTCTCTTCTCCTGGAAGGATGTCACCAAGGAGTATGGAACCAATCTCTCCAATGAGCTCTCGGTTATCAGCATTTGCTGCTCAGCGTGAGAAACAGCAGCACCAACAGCTGCGAAGCCTTAGTTCAAGGGACCTTGGTGTCAACGTCCCCGTCTCAATGGTTGGGTCCCCAGTTAATAATAACTCCTGGTCTAATTGGGGTTCTCCTCATCATGGGAATGGAAAAGTAGATTGGTCAGTAAATGGAAACGAGCTAGGTCGATTGCAGCGGTCATCGTCGTTCGAGCTCAGAAACAATGGTGGGGAGGAGCCCGATCTATCCTGGGTTCAATCCCTTGTCAAGGAATCTCCAGCCGAGATAAGAGAGAAGCTGGCAGGCTCTGGCCCTGTTGTATCTTCTGATGGACTGAATTCAAATCCGAATCCGCAAGTCGAGTCAATTGATCATTCTGTTCTAGGAGCCTGGCTTGAGCAAATGCAGCTGGATCAGCTTCTAGTCTAA 2316 0.4598 MEMEALNLAFAESRSLLQIQCSDFAILPNRSMCSGPEKSKSLSTSSSAVEGSTTNTKDMKNLTVHTEDSFSCLLELASNNDFEDFKVALGRDVSLINKVGLWYVRQIGSKQIVLEHRTPLMVAAMYGSIDVLKLALSCPEADVNFSCGSDQSTPLHCASSGGSVNAVDVVKLLLSAGADISCVDANGNRPVDVIVVPPKLEGLKATLEDLLSDSASDGSVVGDCCFIPVSVNSSCSDSAAHLSSPENGLPSSPMASKFTDTAVNCASEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTAEELRPLYMSTGSAVPSPRSSASTPNVMDMAAAMSLFPGSPSSISSMSASPFAQPMSPSSTSGISHSSNAWPQPNVPALHLPGSINIQTSRLRSSLNARDMHPEDLDHMLQDLDAQQQHLLNDLGCFSQPRPSAISVSRSGRSKTLTPSNLDDLFSAEISSSPRYSDPTAAASVFSPTHKSAIMMNQFQQLQSSLSPINTSASSPRNGKHPLLQASFGVSSPGRMSPRSMEPISPMSSRLSAFAAQREKQQHQQLRSLSSRDLGVNVPVSMVGSPVNNNSWSNWGSPHHGNGKVDWSVNGNELGRLQRSSSFELRNNGGEEPDLSWVQSLVKESPAEIREKLAGSGPVVSSDGLNSNPNPQVESIDHSVLGAWLEQMQLDQLLV 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0036 771 Pfam Ankyrin repeats (3 copies) 105 182 IPR002110 GO:0005515
Aed1g0036 771 ProSiteProfiles Zinc finger C3H1-type profile. 335 357 IPR000571 GO:0046872
Aed1g0036 771 MobiDBLite consensus disorder prediction 434 460 - -
Aed1g0036 771 ProSiteProfiles Ankyrin repeat region circular profile. 150 184 - -
Aed1g0036 771 PANTHER UNKEMPT FAMILY MEMBER 52 769 IPR045234 -
Aed1g0036 771 SUPERFAMILY Ankyrin repeat 63 195 IPR036770 -
Aed1g0036 771 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 335 355 IPR000571 GO:0046872
Aed1g0036 771 SMART ANK_2a 150 182 IPR002110 GO:0005515
Aed1g0036 771 SMART ANK_2a 115 145 IPR002110 GO:0005515
Aed1g0036 771 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 52 769 - -
Aed1g0036 771 MobiDBLite consensus disorder prediction 35 54 - -
Aed1g0036 771 SMART c3hfinal6 365 388 IPR000571 GO:0046872
Aed1g0036 771 SMART c3hfinal6 330 356 IPR000571 GO:0046872
Aed1g0036 771 Gene3D - 330 393 - -
Aed1g0036 771 Gene3D - 30 243 IPR036770 -
Aed1g0036 771 ProSiteProfiles Ankyrin repeat profile. 150 185 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0036 Aed-Chr1 1026476 1032107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0036 49 768 C2H2 Transcription Factor Family AT5G12850 52.886 0.0 679
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed1g0036 Ank_2 2.4e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0036 - - gmx:100792574 1187.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0036 1 1026476 1032107 Aed1g0036 1 1026476 1032107 ECH